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(-) Description

Title :  CRYSTAL STRUCTURE OF A NITROREDUCTASE-LIKE FAMILY PROTEIN (PNBA, BH06130) FROM BARTONELLA HENSELAE STR. HOUSTON-1 AT 1.45 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  24 Mar 09  (Deposition) - 07 Apr 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Flavoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Nitroreductase-Like Family Protein (Yp_033442. 1) From Bartonella Henselae Houston-1 At 1. 45 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NITROREDUCTASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BH06130, PNBA, YP_033442.1
    Organism Common: ROCHALIMAEA HENSELAE
    Organism Scientific: BARTONELLA HENSELAE STR. HOUSTON-1
    Organism Taxid: 283166

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 31)

Asymmetric/Biological Unit (6, 31)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CL2Ligand/IonCHLORIDE ION
3EDO7Ligand/Ion1,2-ETHANEDIOL
4FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
5MSE16Mod. Amino AcidSELENOMETHIONINE
6UNL2Ligand/IonUNKNOWN LIGAND

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:15 , LYS A:16 , SER A:17 , ARG A:19 , ASN A:124 , TYR A:128 , ALA A:170 , GLN A:171 , ALA A:172 , ALA A:173 , THR A:213 , ARG A:215 , UNL A:231 , EDO A:233 , HOH A:247 , HOH A:255 , HOH A:262 , HOH A:299 , PRO B:42 , SER B:43 , GLY B:44 , ASN B:46 , MSE B:152BINDING SITE FOR RESIDUE FMN A 230
02AC2SOFTWAREARG A:79 , TYR A:84 , LYS A:121 , ALA A:173 , ASP A:176 , FMN A:230 , EDO A:233 , GLY B:44 , THR B:45BINDING SITE FOR RESIDUE UNL A 231
03AC3SOFTWAREARG A:79 , TYR A:83 , TYR A:84BINDING SITE FOR RESIDUE CL A 232
04AC4SOFTWAREARG A:19 , GLY A:100 , FMN A:230 , UNL A:231 , HOH A:256 , HOH A:304 , HOH A:378BINDING SITE FOR RESIDUE EDO A 233
05AC5SOFTWARELEU A:13 , ARG A:15 , LYS A:16 , HOH A:262 , HOH A:299 , HOH A:302 , HOH A:355 , HOH B:285BINDING SITE FOR RESIDUE EDO A 234
06AC6SOFTWAREGLY A:44 , GLY A:145 , SER A:146 , ASP A:149 , HOH A:409 , TYR B:83BINDING SITE FOR RESIDUE EDO A 235
07AC7SOFTWAREGLY A:163 , HOH A:418BINDING SITE FOR RESIDUE ACT A 236
08AC8SOFTWAREPRO A:42 , SER A:43 , GLY A:44 , ASN A:46 , MSE A:152 , ARG B:15 , LYS B:16 , SER B:17 , ARG B:19 , ASN B:124 , TYR B:128 , ALA B:170 , GLN B:171 , ALA B:172 , ALA B:173 , THR B:213 , ARG B:215 , UNL B:231 , EDO B:234 , HOH B:339 , HOH B:358 , HOH B:449 , HOH B:451BINDING SITE FOR RESIDUE FMN B 230
09AC9SOFTWAREGLY A:44 , THR A:45 , ARG B:79 , TYR B:84 , ALA B:173 , ASP B:176 , FMN B:230 , EDO B:234BINDING SITE FOR RESIDUE UNL B 231
10BC1SOFTWAREARG B:79 , TYR B:83 , TYR B:84BINDING SITE FOR RESIDUE CL B 232
11BC2SOFTWARETYR A:83 , GLY B:44 , GLY B:145 , SER B:146 , ASP B:149 , HOH B:401BINDING SITE FOR RESIDUE EDO B 233
12BC3SOFTWAREARG B:19 , GLY B:100 , FMN B:230 , UNL B:231 , HOH B:254 , HOH B:426 , HOH B:432BINDING SITE FOR RESIDUE EDO B 234
13BC4SOFTWAREASP A:219 , ARG B:32 , GLU B:214 , ARG B:215 , GLU B:216 , PRO B:217 , HOH B:266 , HOH B:328 , HOH B:527BINDING SITE FOR RESIDUE EDO B 235
14BC5SOFTWAREGLU A:66 , HOH A:252 , ARG B:162 , GLY B:165 , ARG B:202 , MSE B:204 , HOH B:492BINDING SITE FOR RESIDUE EDO B 236
15BC6SOFTWAREPHE A:9 , HOH A:388 , GLU B:33 , HOH B:475BINDING SITE FOR RESIDUE ACT B 237

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GR3)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Glu A:90 -Pro A:91
2Tyr A:228 -Pro A:229
3Glu B:90 -Pro B:91
4Tyr B:228 -Pro B:229

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GR3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GR3)

(-) Exons   (0, 0)

(no "Exon" information available for 3GR3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:226
 aligned with A0A0H3M323_B | A0A0H3M323 from UniProtKB/TrEMBL  Length:229

    Alignment length:226
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223      
         A0A0H3M323_B     4 APIDIFQSILSRKSIRAFTDQPVTQETIREILKLAARAPSGTNLQPWQVIVLTGKILQKVGQELSQLVLSGIKGEREYHYYPRQWREPYLSRRRKVGLDLYKSLGIQKGDQEKMLHQKAKNFLFYGAPVGLLFTIDHDMEMGSWLDLGMFMQTIMLAARGFGLDTCAQAAFADYHKQIRSLLSVPSDRHIICGMALGYRDMNAPENNFETEREPIDNFVHFIKSYP 229
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh...........hhhhhhhhhhhhh...hhhhh...eeeeehhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.eeeeeeee....hhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhh....eeeeeeeeee.....hhhhh......hhhh.eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gr3 A   4 APIDIFQSILSRKSIRAFTDQPVTQETIREILKLAARAPSGTNLQPWQVIVLTGKILQKVGQELSQLVLSGIKGEREYHYYPRQWREPYLSRRRKVGLDLYKSLGIQKGDQEKmLHQKAKNFLFYGAPVGLLFTIDHDmEmGSWLDLGmFmQTImLAARGFGLDTCAQAAFADYHKQIRSLLSVPSDRHIICGmALGYRDmNAPENNFETEREPIDNFVHFIKSYP 229
                                    13        23        33        43        53        63        73        83        93       103       113   |   123       133       143|      153|   |  163       173       183       193   |   203|      213       223      
                                                                                                                                           117-MSE                  142-MSE   152-MSE |                                    197-MSE  |                         
                                                                                                                                                                      144-MSE   154-MSE                                           204-MSE                     
                                                                                                                                                                                    158-MSE                                                                   


Chain B from PDB  Type:PROTEIN  Length:226
 aligned with A0A0H3M323_B | A0A0H3M323 from UniProtKB/TrEMBL  Length:229

    Alignment length:226
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223      
         A0A0H3M323_B     4 APIDIFQSILSRKSIRAFTDQPVTQETIREILKLAARAPSGTNLQPWQVIVLTGKILQKVGQELSQLVLSGIKGEREYHYYPRQWREPYLSRRRKVGLDLYKSLGIQKGDQEKMLHQKAKNFLFYGAPVGLLFTIDHDMEMGSWLDLGMFMQTIMLAARGFGLDTCAQAAFADYHKQIRSLLSVPSDRHIICGMALGYRDMNAPENNFETEREPIDNFVHFIKSYP 229
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh...........hhhhhhhhhhhhh...hhhhh...eeeeehhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.eeeeeeee....hhhhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhhh....eeeeeeeeee.....hhhhh......hhhhheeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gr3 B   4 APIDIFQSILSRKSIRAFTDQPVTQETIREILKLAARAPSGTNLQPWQVIVLTGKILQKVGQELSQLVLSGIKGEREYHYYPRQWREPYLSRRRKVGLDLYKSLGIQKGDQEKmLHQKAKNFLFYGAPVGLLFTIDHDmEmGSWLDLGmFmQTImLAARGFGLDTCAQAAFADYHKQIRSLLSVPSDRHIICGmALGYRDmNAPENNFETEREPIDNFVHFIKSYP 229
                                    13        23        33        43        53        63        73        83        93       103       113   |   123       133       143|      153|   |  163       173       183       193   |   203|      213       223      
                                                                                                                                           117-MSE                  142-MSE   152-MSE |                                    197-MSE  |                         
                                                                                                                                                                      144-MSE   154-MSE                                           204-MSE                     
                                                                                                                                                                                    158-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GR3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GR3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GR3)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3GR3)

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