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(-) Description

Title :  CRYSTAL STRUCTURE OF CELL INHIBITING FACTOR (CIF) FROM PHOTORHABDUS LUMINESCENS
 
Authors :  A. Crow, M. J. Banfield
Date :  24 Mar 09  (Deposition) - 02 Jun 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Cif, Cell Inhibiting Factor, Protease-Like, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Crow, P. R. Race, G. Jubelin, C. Varela Chavez, J. M. Escoubas, E. Oswald, M. J. Banfield
Crystal Structures Of Cif From Bacterial Pathogens Photorhabdus Luminescens And Burkholderia Pseudomallei.
Plos One V. 4 E5582 2009
PubMed-ID: 19440549  |  Reference-DOI: 10.1371/JOURNAL.PONE.0005582

(-) Compounds

Molecule 1 - CELL INHIBITING FACTOR (CIF)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PLU2515
    Organism Scientific: PHOTORHABDUS LUMINESCENS SUBSP. LAUMONDII
    Organism Taxid: 141679

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:247 , VAL A:263 , GLU A:264 , LEU A:265 , ASP A:266 , HOH A:456BINDING SITE FOR RESIDUE SO4 A 309
2AC2SOFTWAREGLU A:120 , PRO A:121 , VAL A:122 , ASP A:202 , LEU A:203 , LEU A:211 , HOH A:318 , HOH A:390 , HOH A:432BINDING SITE FOR RESIDUE GOL A 310
3AC3SOFTWARETYR A:277 , LEU A:278 , THR A:279 , GLU A:280 , HOH A:493BINDING SITE FOR RESIDUE GOL A 311

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GQJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3GQJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GQJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GQJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3GQJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:248
 aligned with Q7N439_PHOLL | Q7N439 from UniProtKB/TrEMBL  Length:313

    Alignment length:248
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294        
         Q7N439_PHOLL    55 SINTIKLIDDIIALHNDPKGNKLLWNDNWQDKIINRDLANIFEKIDESVSELGGLEMYQEMVGVNPYDPTEPVCGLSAQNIFKLMTEGEHAVDPVEMAQTGKIDGNEFAESVDQLSSAKNYVALVNDRRLGHMFLIDIPSNDQETVGYIYQSDLGQGALPPLKIADWLNSRGKDAVSLNKLKKLLSREFNLLSDDEKRALISETLDIHKDVSNVELDRIKRDRGVDIYLTEYDVNNFYENIETLKSKL 302
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh.hhhhhhh...........hhhhhhhhhhhhhhhh.hhhhhhhhhh.........hhhhhhhhhhhhhhh.....hhhhhhhhh...hhhhhhhhh......eeeeeeee....eeeeeee.......eeeee............hhhhhhhhhhhh.eehhhhhhhh.hhhhh...hhhhhhhhhhhh..................eeeeeeeehhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gqj A  50 SINTIKLIDDIIALHNDPKGNKLLWNDNWQDKIINRDLANIFEKIDESVSELGGLEMYQEMVGVNPYDPTEPVCGLSAQNIFKLMTEGEHAVDPVEMAQTGKIDGNEFAESVDQLSSAKNYVALVNDRRLGHMFLIDIPSNDQETVGYIYQSDLGQGALPPLKIADWLNSRGKDAVSLNKLKKLLSREFNLLSDDEKRALISETLDIHKDVSNVELDRIKRDRGVDIYLTEYDVNNFYENIETLKSKL 297
                                    59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GQJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GQJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GQJ)

(-) Gene Ontology  (0, 0)

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    (no "Gene Ontology" information available for 3GQJ)

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 Related Entries

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        Q7N439_PHOLL | Q7N439: 4fbj

(-) Related Entries Specified in the PDB File

3gqm CRYSTAL STRUCTURE OF CELL INHIBITING FACTOR (CIF) FROM BURKHOLDERIA PSEUDOMALLEI (CIFBP)