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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE POLYSACCHARIDE BINDING PROTEINS (DUF1812) (NP_809975.1) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 2.20 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  26 Feb 09  (Deposition) - 24 Mar 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Np_809975. 1, Putative Polysaccharide Binding Proteins (Duf1812), Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Lipoprotein, Unknown Function, Carbohydrate Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Xu, P. Abdubek, T. Astakhova, H. L. Axelrod, C. Bakolitsa, X. Cai, D. Carlton, C. Chen, H. J. Chiu, M. Chiu, T. Clayton, D. Das, M. C. Deller L. Duan, K. Ellrott, C. L. Farr, J. Feuerhelm, J. C. Grant, A. Grzechnik G. W. Han, L. Jaroszewski, K. K. Jin, H. E. Klock, M. W. Knuth, P. Kozbial S. S. Krishna, A. Kumar, D. Marciano, D. Mcmullan, M. D. Miller, A. T. Morse, E. Nigoghossian, A. Nopakun, L. Okach, C. Puckett, R. Reyes, N. Sefcovic, H. J. Tien, C. B. Trame, H. Van Den Bedem, D. Weekes, T. Wooten, A. Yeh, J. Zhou, K. O. Hodgson, J. Wooley, M. A. Elsliger, A. M. Deacon, A. Godzik, S. A. Lesley, I. A. Wilson
A Conserved Fold For Fimbrial Components Revealed By The Crystal Structure Of A Putative Fimbrial Assembly Protein (Bt1062) From Bacteroides Thetaiotaomicron At 2. 2 A Resolution
Acta Crystallogr. , Sect. F V. 66 1281 2010
PubMed-ID: 20944223  |  Reference-DOI: 10.1107/S1744309110006548

(-) Compounds

Molecule 1 - PUTATIVE POLYSACCHARIDE BINDING PROTEINS (DUF1812)
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BT_1062, NP_809975.1
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON VPI-5482
    Organism Taxid: 226186

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric/Biological Unit (2, 11)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:172 , ASN A:287BINDING SITE FOR RESIDUE EDO A 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GF8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3GF8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GF8)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3GF8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:284
 aligned with Q8A8V5_BACTN | Q8A8V5 from UniProtKB/TrEMBL  Length:317

    Alignment length:284
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313    
         Q8A8V5_BACTN    34 ECRLSVKFKYDYNMEFADAFHAQVDKVELYVFDKNGKYLFKQAEEGSALSTGNYLMEVELPVGQYQFMAWAGARDSYDITSLTPGVSTLTDLKLKLKREASLIINKRMETLWYGEVINVNFDGTVHQTETINLIRDTKIVRFGFQSYTGSWTLDMNDYDYEIIESNGHLGHDNSLLDDDVLSFRPYYMEQKDPATAYVDMNTMRLMEDRKTRLVLTEKASGKRVFDINLIDYLAMTNAEGKNLSTQEYLDRQSNYHIIFFLSESWLAVQIVVNGWVHRIQEENQ 317
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.........hhhhhh.eeeeeee.....eeeeeeee.hhhhh....eee....eeeeeeeee.....eee........hhhh.eeee......ee.......eeeeeeeeee.....eeeeeeeee..eeeeeeeee.......hhh.eeeeeee...eee..........eee...eee.......eeeeee.........eeeeee.....eeeeeehhhhhhh.hhhhh..hhhhhhhhh.eeeeeeee.....eeeeee..eeee.hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gf8 A  34 ECRLSVKFKYDYNmEFADAFHAQVDKVELYVFDKNGKYLFKQAEEGSALSTGNYLmEVELPVGQYQFmAWAGARDSYDITSLTPGVSTLTDLKLKLKREASLIINKRmETLWYGEVINVNFDGTVHQTETINLIRDTKIVRFGFQSYTGSWTLDmNDYDYEIIESNGHLGHDNSLLDDDVLSFRPYYmEQKDPATAYVDmNTmRLmEDRKTRLVLTEKASGKRVFDINLIDYLAmTNAEGKNLSTQEYLDRQSNYHIIFFLSESWLAVQIVVNGWVHRIQEENQ 317
                                    43   |    53        63        73        83     |  93       103       113       123       133       143       153       163       173       183    |  193       203       213       223       233  |  | 243       253       263    |  273       283       293       303       313    
                                        47-MSE                                    89-MSE     101-MSE                                 141-MSE                                        188-MSE                          221-MSE     233-MSE |                          268-MSE                                             
                                                                                                                                                                                                                                    236-MSE                                                                             
                                                                                                                                                                                                                                       239-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GF8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GF8)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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