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(-) Description

Title :  STRUCTURE OF THE PHOSPHORYLATION MIMETIC OF OCCLUDIN C-TERM TAIL
 
Authors :  B. R. Tash, J. M. Sundstrom, T. Murakami, J. M. Flanagan, M. C. Bewley, D. A. Antonetii
Date :  09 Feb 09  (Deposition) - 12 May 09  (Release) - 12 May 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Occludin, Diabetic Retinopathy, Zo-1, Tight Junction, Adhesion, Cell Junction, Coiled Coil, Membrane, Phosphoprotein, Transmembrane, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. M. Sundstrom, B. R. Tash, T. Murakami, J. M. Flanagan, M. C. Bewley, B. A. Stanley, K. B. Gonsar, D. A. Antonetti
Identification And Analysis Of Occludin Phosphosites: A Combined Mass Spectrometry And Bioinformatics Approach.
J. Proteome Res. V. 8 808 2009
PubMed-ID: 19125584  |  Reference-DOI: 10.1021/PR7007913
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - OCCLUDIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28ATEV
    Expression System StrainBL21GOLD(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneOCLN
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3G7C)

(-) Sites  (0, 0)

(no "Site" information available for 3G7C)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3G7C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3G7C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3G7C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3G7C)

(-) Exons   (4, 4)

Asymmetric/Biological Unit (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003964422aENSE00002074220chr5:68788617-68788727111OCLN_HUMAN-00--
1.3ENST000003964423ENSE00001007952chr5:68800004-68800121118OCLN_HUMAN1-17170--
1.4ENST000003964424ENSE00001486184chr5:68804968-68805646679OCLN_HUMAN17-2432270--
1.5ENST000003964425ENSE00001486183chr5:68809775-68809936162OCLN_HUMAN244-297540--
1.6ENST000003964426ENSE00001740502chr5:68830521-68830666146OCLN_HUMAN298-346490--
1.7cENST000003964427cENSE00001600578chr5:68840731-68840946216OCLN_HUMAN346-418731A:414-4185
1.8ENST000003964428ENSE00001660075chr5:68843757-68843928172OCLN_HUMAN418-475581A:418-47558
1.9ENST000003964429ENSE00001667294chr5:68847371-6884741242OCLN_HUMAN476-489141A:476-48914
1.10aENST0000039644210aENSE00002050990chr5:68849397-68849498102OCLN_HUMAN490-522331A:490-52233

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:109
 aligned with OCLN_HUMAN | Q16625 from UniProtKB/Swiss-Prot  Length:522

    Alignment length:109
                                   423       433       443       453       463       473       483       493       503       513         
           OCLN_HUMAN   414 EDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDRQKT 522
               SCOP domains d3g7ca_ A: Occludin                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.7c ---------------------------------------------------------Exon 1.9      Exon 1.10a  PDB: A:490-522        Transcript 1 (1)
           Transcript 1 (2) ----Exon 1.8  PDB: A:418-475 UniProt: 418-475                 ----------------------------------------------- Transcript 1 (2)
                 3g7c A 414 EEWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYREESEEYMAAADEYNRLKQVKGDADYKSKKNHCKQLKSKLSHIKKMVGDYDRQKT 522
                                   423       433       443       453       463       473       483       493       503       513         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3G7C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3G7C)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (OCLN_HUMAN | Q16625)
molecular function
    GO:0008757    S-adenosylmethionine-dependent methyltransferase activity    Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.
    GO:0008119    thiopurine S-methyltransferase activity    Catalysis of the reaction: S-adenosyl-L-methionine + a thiopurine = S-adenosyl-L-homocysteine + a thiopurine S-methylether.
biological process
    GO:0046498    S-adenosylhomocysteine metabolic process    The chemical reactions and pathways involving S-adenosylhomocysteine; the L-enantiomer is formed from S-adenosylmethionine and is a strong inhibitor of S-adenosylmethionine-mediated methylation reactions. It can be cleaved to form adenosine and homocysteine.
    GO:0046500    S-adenosylmethionine metabolic process    The chemical reactions and pathways involving S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism.
    GO:0070830    bicellular tight junction assembly    The aggregation, arrangement and bonding together of a set of components to form a tight junction, an occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet.
    GO:0045216    cell-cell junction organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cell-cell junction. A cell-cell junction is a specialized region of connection between two cells.
    GO:0032259    methylation    The process in which a methyl group is covalently attached to a molecule.
    GO:0006461    protein complex assembly    The aggregation, arrangement and bonding together of a set of components to form a protein complex.
cellular component
    GO:0016324    apical plasma membrane    The region of the plasma membrane located at the apical end of the cell.
    GO:0016327    apicolateral plasma membrane    The apical end of the lateral plasma membrane of epithelial cells.
    GO:0005923    bicellular tight junction    An occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet; the outer leaflets of the two interacting plasma membranes are seen to be tightly apposed where sealing strands are present. Each sealing strand is composed of a long row of transmembrane adhesion proteins embedded in each of the two interacting plasma membranes.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0005911    cell-cell junction    A cell junction that forms a connection between two or more cells in a multicellular organism; excludes direct cytoplasmic junctions such as ring canals.
    GO:0031410    cytoplasmic vesicle    A vesicle found in the cytoplasm of a cell.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030139    endocytic vesicle    A membrane-bounded intracellular vesicle formed by invagination of the plasma membrane around an extracellular substance. Endocytic vesicles fuse with early endosomes to deliver the cargo for further sorting.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OCLN_HUMAN | Q166251wpa 1xaw

(-) Related Entries Specified in the PDB File

1wpa 1xaw