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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE (BVU_0621) FROM BACTEROIDES VULGATUS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET BVR56D
 
Authors :  F. Forouhar, S. Lew, J. Seetharaman, R. Xiao, S. Sahdev, E. L. Foote, C. Ciccosanti, D. Wang, J. K. Everett, R. Nair, T. B. Acton, B Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  08 Feb 09  (Deposition) - 17 Feb 09  (Release) - 17 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-Beta Protein, Endonuclease/Exonuclease/Phosphatase, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Endonuclease, Exonuclease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, S. Lew, J. Seetharaman, R. Xiao, S. Sahdev, E. L. Foote, C. Ciccosanti, D. Wang, J. K. Everett, R. Nair, T. B. Acton, B Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Endonuclease/Exonuclease/Phosphatase (Bvu_0621) From Bacteroides Vulgatus.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
    Atcc: 8482
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 22-280
    Gene: BVU_0621
    Organism Scientific: BACTEROIDES VULGATUS ATCC 8482
    Organism Taxid: 435590
    Strain: DSM 1447 / NCTC 11154

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3G6S)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3G6S)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3G6S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:261
 aligned with A6KY15_BACV8 | A6KY15 from UniProtKB/TrEMBL  Length:281

    Alignment length:261
                                                                                                                                                                                                                                                                                             281 
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281 
         A6KY15_BACV8    22 KTDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQDLRAGLPEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVGEEARRQSALLIIRKIKEIVGERPAVVTGDFNVTDASDAYETITTNEFVMKDAYKTAARVTGVDYTFHDFARIPAEDCEKIDFIFVTPQVLVKSCEIPAEVPEALLSDHNPQLADLEF-   -
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhh..eeee...............eeee...eeeeeeeeee...................eeeeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhhhhhh....eeeeee......hhhhhhhhh.....eehhhhh.eeee...........hhhhh...eeeee....eeeeeee..............eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g6s A   1 KTDVRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGmQEVLHNQFQDLRAGLPEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGmmGWDAVCVRIATWAKFKDKATGKIFmAVNTHFDHVGEEARRQSALLIIRKIKEIVGERPAVVTGDFNVTDASDAYETITTNEFVmKDAYKTAARVTGVDYTFHDFARIPAEDCEKIDFIFVTPQVLVKSCEIPAEVPEALLSDHNPQLADLELE 261
                                    10        20        30        40   |    50        60        70        80        90       100      |110       120       130  |    140       150       160       170       180       190 |     200       210       220       230       240       250       260 
                                                                      44-MSE                                                        107-MSE                   133-MSE                                                    192-MSE                                                                 
                                                                                                                                     108-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3G6S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3G6S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3G6S)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (A6KY15_BACV8 | A6KY15)
molecular function
    GO:0004519    endonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
    GO:0004527    exonuclease activity    Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
biological process
    GO:0090305    nucleic acid phosphodiester bond hydrolysis    The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.

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