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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE S-ADENOSYLMETHIONINE DEPENDENT METHYLTRANSFERASE FROM LISTERIA MONOCYTOGENES
 
Authors :  Y. Patskovsky, P. Sampathkumar, M. Gilmore, S. Miller, J. Koss, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  05 Feb 09  (Deposition) - 17 Feb 09  (Release) - 17 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A (1x),B (2x)
Keywords :  Structural Genomics, Methyltransferase, Psi-2, Protein Structure Initiative, New York Structural Genomix Research Consortium Nysgxrc, New York Sgx Research Center For Structural Genomics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, P. Sampathkumar, M. Gilmore, S. Miller, J. Koss, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of S-Adenosylmethionine Dependent Methyltransferase From Listeria Monocytogenes
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE S-ADENOSYLMETHIONINE DEPENDENT METHYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGX3(BC)
    Expression System Strain: BL21(DE3)-CODON+RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LMOF2365_1325
    Organism Scientific: LISTERIA MONOCYTOGENES STR. 4B F2365
    Organism Taxid: 265669
    Strain: F2365, SEROTYPE 4B

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): A (1x)B (2x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:122 , ASP A:123 , HOH A:269BINDING SITE FOR RESIDUE CL A 252
2AC2SOFTWAREPHE B:122 , ASP B:123 , HOH B:285BINDING SITE FOR RESIDUE CL B 252

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3G5L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3G5L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3G5L)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh........eeeee....hhhhhhhhhh...eeeeee.hhhhhhhhhhhh....eeeee.hhhhh......eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeehhhhhh......ee.....eeeeee.......eeeeee..eeeeee..hhhhhhhhhhhh.eeeeeee....hhhhh.hhhhhhhhh...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3g5l A  23 EGLKAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAPELKDLPEMQDEYRRPMMLLISATKQE 244
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242  


Chain B from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh........eeeee....hhhhhhhhhh...eeeeee.hhhhhhhhhhh.....eeeee.hhhhh......eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeeehhhhhh......ee.....eeeeee.......eeeeee..eeeeee..hhhhhhhhhhhh.eeeeeee................eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g5l B  26 KAAGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAPEMQDEYRRPMMLLISATKQE 244
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215 ||    231       241   
                                                                                                                                                                                                                         217|                    
                                                                                                                                                                                                                          224
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3G5L)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3G5L)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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