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(-) Description

Title :  CRYSTAL STRUCTURE OF CANDIDA GLABRATA FMN ADENYLYLTRANSFERASE IN COMPLEX WITH ATP
 
Authors :  C. Huerta, H. Zhang
Date :  04 Feb 09  (Deposition) - 26 May 09  (Release) - 26 May 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.87
Chains :  Asym./Biol. Unit :  A
Keywords :  Fad Biosynthesis, Alpha/Beta Protein, Rossmann-Like Fold, Atp Binding, Extended Loop Region, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Huerta, D. Borek, M. Machius, N. V. Grishin, H. Zhang
Structure And Mechanism Of A Eukaryotic Fmn Adenylyltransferase.
J. Mol. Biol. V. 389 388 2009
PubMed-ID: 19375431  |  Reference-DOI: 10.1016/J.JMB.2009.04.022
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - FMN ADENYLYLTRANSFERASE
    Chains: A
    EC Number: 2.7.7.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PHIS PARALLEL
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CAGL0K01397G, FAD1
    Organism Common: YEAST
    Organism Scientific: CANDIDA GLABRATA
    Organism Taxid: 5478
    Strain: NCYC

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
3POP1Ligand/IonPYROPHOSPHATE 2-

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:60 , TYR A:61 , ASN A:62 , GLY A:64 , LYS A:65 , ASP A:66 , CYS A:67 , VAL A:106 , PHE A:107 , ILE A:108 , ILE A:162 , GLY A:163 , ILE A:164 , ARG A:165 , ASP A:168 , TYR A:216 , SER A:222 , LEU A:223 , GLU A:296 , ACT A:306 , HOH A:322 , HOH A:445BINDING SITE FOR RESIDUE ATP A 305
2AC2SOFTWARESER A:60 , MET A:143 , PHE A:147 , ATP A:305 , HOH A:478BINDING SITE FOR RESIDUE ACT A 306
3AC3SOFTWAREASN A:119 , ALA A:270 , ASP A:271BINDING SITE FOR RESIDUE POP A 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3G59)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3G59)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3G59)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3G59)

(-) Exons   (0, 0)

(no "Exon" information available for 3G59)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:289
 aligned with Q6FNA9_CANGA | Q6FNA9 from UniProtKB/TrEMBL  Length:304

    Alignment length:308
                                1                                                                                                                                                                                                                                                                                                               
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296        
         Q6FNA9_CANGA     - ----MRLGDAAELCYNLTSSYLQIAAESDSIIAQTQRAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHTDPFGEHLKPIQKTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPNPHLRKDKNSTPLKLNFEWEIENRYKHNEVTKAEPIPIADEDLVKIENLHEDYYPGWYLVDDKLERAGRIKKK 304
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh..........eeee...hhhhhhhhhhhhhhhhhhhh-------------------.eeee......hhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh....eee...............eee........eee......hhhhhhhhhhhhh...hhhhhhh............hhhhh...........hhhhhhh...............hhhhhhhhhh......hhhhh.hhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3g59 A  -3 GAMVMRLGDAAELCYNLTSSYLQIAAESDSIIAQTQRAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYI-------------------LPTVFIDHDDTFKTLENFIEETSLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHTDPFGEHLKPIQKTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPNPHLRKDKNSTPLKLNFEWEIENRYKHNEVTKAEPIPIADEDLVKIENLHEDYYPGWYLVDDKLERAGRIKKK 304
                                     6        16        26        36        46        56        66        76      |  -         -      |106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296        
                                                                                                                 83                 103
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3G59)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3G59)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3G59)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q6FNA9_CANGA | Q6FNA9)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003919    FMN adenylyltransferase activity    Catalysis of the reaction: ATP + FMN = diphosphate + FAD.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006747    FAD biosynthetic process    The chemical reactions and pathways resulting in the formation of FAD, the oxidized form of flavin-adenine dinucleotide.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q6FNA9_CANGA | Q6FNA9: 3fwk 3g5a 3g6k 4kkv

(-) Related Entries Specified in the PDB File

3fwk CRYSTAL STRUCTURE OF CANDIDA GLABRATA FMN ADENYLYLTRANSFERASE
3g5a CRYSTAL STRUCTURE OF CANDIDA GLABRATA FMN ADENYLYLTRANSFERASE IN COMPLEX WITH FMN AND ATP ANALOG AMPCPP
3g6k CRYSTAL STRUCTURE OF CANDIDA GLABRATA FMN ADENYLYLTRANSFERASE IN COMPLEX WITH FAD AND INORGANIC PYROPHOSPHATE