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(-) Description

Title :  CRYSTAL STRUCTURE OF THE FULL-LENGTH LP_1913 PROTEIN FROM LACTOBACILLUS PLANTARUM, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LPR140
 
Authors :  J. Seetharaman, Y. Chen, F. Forouhar, S. Sahdev, H. Janjua, R. Xiao, C. Ciccosanti, E. L. Foote, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  25 Dec 08  (Deposition) - 20 Jan 09  (Release) - 20 Jan 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Alpha-Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Seetharaman, Y. Chen, F. Forouhar, S. Sahdev, H. Janjua, R. Xiao, C. Ciccosanti, E. L. Foote, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Full-Length Lp_1913 Protein From Lactobacillus Plantarum, Northeast Structural Genomics Consortium Target Lpr140
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN LP_1913
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LP_1913
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590
    Strain: WCFS1

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 23)

Asymmetric Unit (1, 23)
No.NameCountTypeFull Name
1MSE23Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 11)
No.NameCountTypeFull Name
1MSE11Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3FNJ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FNJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3FNJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3FNJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3FNJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3FNJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:120
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:120
                                    10        20        30        40        50        60        70        80        90       100       110       120
         F9UPN6_LACPL     1 MNDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGMQLPVETL 120
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.eehhhhhhhhhhh....eeeee....hhhhhheee...ee.......hhhhhh....eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3fnj A   1 mNDKKIELLTTYLSLYIDHHTVLADmQNATGKYVVLDVRNAPAQVKKDQIKGAIAmPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGmQLPVETL 120
                            |       10        20     |  30        40        50     |  60        70        80        90       100       110  |    120
                            |                       26-MSE                        56-MSE                                                  113-MSE   
                            1-MSE                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:121
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:121
                                    10        20        30        40        50        60        70        80        90       100       110       120 
         F9UPN6_LACPL     1 MNDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGMQLPVETLA 121
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.eehhhhhhhhhh......eeee................ee........hhhhh....eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fnj B   1 mNDKKIELLTTYLSLYIDHHTVLADmQNATGKYVVLDVRNAPAQVKKDQIKGAIAmPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGmQLPVETLA 121
                            |       10        20     |  30        40        50     |  60        70        80        90       100       110  |    120 
                            1-MSE                   26-MSE                        56-MSE                                                  113-MSE    


Chain C from PDB  Type:PROTEIN  Length:120
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:120
                                    10        20        30        40        50        60        70        80        90       100       110       120
         F9UPN6_LACPL     1 MNDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGMQLPVETL 120
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhheehhhhhhhhhhh....eeeee....hhhhhh.ee...ee.hhhhhhhhhhhh....eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhh...ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3fnj C   1 mNDKKIELLTTYLSLYIDHHTVLADmQNATGKYVVLDVRNAPAQVKKDQIKGAIAmPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGmQLPVETL 120
                            |       10        20     |  30        40        50     |  60        70        80        90       100       110  |    120
                            1-MSE                   26-MSE                        56-MSE                                                  113-MSE   


Chain D from PDB  Type:PROTEIN  Length:122
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:122
                                                                                                                                                  122 
                                    11        21        31        41        51        61        71        81        91       101       111       121| 
         F9UPN6_LACPL     2 NDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGMQLPVETLAD-   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eehhhhhhhhhh.....eeeee....hhhhhheee...ee........hhhhh....eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhh...eee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fnj D   2 NDKKIELLTTYLSLYIDHHTVLADmQNATGKYVVLDVRNAPAQVKKDQIKGAIAmPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGmQLPVETLADL 123
                                    11        21    |   31        41        51    |   61        71        81        91       101       111 |     121  
                                                   26-MSE                        56-MSE                                                  113-MSE      


Chain E from PDB  Type:PROTEIN  Length:120
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:120
                                    10        20        30        40        50        60        70        80        90       100       110       120
         F9UPN6_LACPL     1 MNDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGMQLPVETL 120
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.eehhhhhhhhhh.....eeeee..........eee...ee.hhhhhhhhhhhh....eeeee......hhhhhhhhhhhhh..eeeee.hhhhhhhhh...eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3fnj E   1 mNDKKIELLTTYLSLYIDHHTVLADmQNATGKYVVLDVRNAPAQVKKDQIKGAIAmPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGmQLPVETL 120
                            |       10        20     |  30        40        50     |  60        70        80        90       100       110  |    120
                            1-MSE                   26-MSE                        56-MSE                                                  113-MSE   


Chain F from PDB  Type:PROTEIN  Length:120
 aligned with F9UPN6_LACPL | F9UPN6 from UniProtKB/TrEMBL  Length:122

    Alignment length:120
                                    10        20        30        40        50        60        70        80        90       100       110       120
         F9UPN6_LACPL     1 MNDKKIELLTTYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGMQLPVETL 120
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.eehhhhhhhhhhh....eeeee.........eeee...ee.hhhhhh.hhhhh....eeeee......hhhhhhhhhhhhhh.eeeee.hhhhhhhhh...eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3fnj F   1 mNDKKIELLTTYLSLYIDHHTVLADmQNATGKYVVLDVRNAPAQVKKDQIKGAIAmPAKDLATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEGWKGmQLPVETL 120
                            |       10        20     |  30        40        50     |  60        70        80        90       100       110  |    120
                            1-MSE                   26-MSE                        56-MSE                                                  113-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3FNJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FNJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FNJ)

(-) Gene Ontology  (0, 0)

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