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(-) Description

Title :  CRYSTAL STRUCTURE OF HYDROLASE DR0930 WITH PROMISCUOUS CATALYTIC ACTIVITY
 
Authors :  A. A. Fedorov, L. V. Fedorov, D. F. Xiang, F. M. Raushel, S. C. Almo
Date :  25 Nov 08  (Deposition) - 30 Jun 09  (Release) - 10 Nov 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Hydrolase, Dr0930, Promiscuous Activity (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. F. Xiang, P. Kolb, A. A. Fedorov, M. M. Meier, L. V. Fedorov, T. T. Nguyen, R. Sterner, S. C. Almo, B. K. Shoichet, F. M. Raushel
Functional Annotation And Three-Dimensional Structure Of Dr0930 From Deinococcus Radiodurans, A Close Relative Of Phosphotriesterase In The Amidohydrolase Superfamily.
Biochemistry V. 48 2237 2009
PubMed-ID: 19159332  |  Reference-DOI: 10.1021/BI802274F
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYDROLASE DR0930
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: DR_0930
    Organism Scientific: DEINOCOCCUS RADIODURANS
    Organism Taxid: 1299
    Synonym: PHOSPHOTRIESTERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
2ZN2Ligand/IonZINC ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
2ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:21 , HIS A:23 , KCX A:143 , ASP A:264 , HOH A:363 , ZN A:402BINDING SITE FOR RESIDUE ZN A 401
2AC2SOFTWAREKCX A:143 , HIS A:176 , HIS A:204 , ARG A:228 , HOH A:363 , ZN A:401BINDING SITE FOR RESIDUE ZN A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3FDK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3FDK)

 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:322
 aligned with Q9RVU2_DEIRA | Q9RVU2 from UniProtKB/TrEMBL  Length:323

    Alignment length:322
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321  
         Q9RVU2_DEIRA     2 TAQTVTGAVAAAQLGATLPHEHVIFGYPGYAGDVTLGPFDHAAALASCTETARALLARGIQTVVDATPNDCGRNPAFLREVSEATGLQILCATGFYYEGEGATTYFKFRASLGDAESEIYEMMRTEVTEGIAGTGIRAGVIKLASSRDAITPYEQLFFRAAARVQRETGVPIITHTQEGQQGPQQAELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSIWHWLGRPPAIPEAALPAVKDWHPLHISDDILPDLRRRGITEEQVGQMTVGNPARLFG 323
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..eeehhhhh.eeeeeeeeee...hhhhhh.....hhhhhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhh.eee.ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee......hhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhh..hhh.eee.hhhhh.hhhhhhhhhh...eeee......hhhhh.hhhhhhhhhhhhhhhhhhh.eee....eeee.......hhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fdk A   2 TAQTVTGAVAAAQLGATLPHEHVIFGYPGYAGDVTLGPFDHAAALASCTETARALLARGIQTVVDATPNDCGRNPAFLREVSEATGLQILCATGFYYEGEGATTYFKFRASLGDAESEIYEMMRTEVTEGIAGTGIRAGVIkLASSRDAITPYEQLFFRAAARVQRETGVPIITHTQEGQQGPQQAELLTSLGADPARIMIGHMDGNTDPAYHRETLRHGVSIAFDRIGLQGMVGTPTDAERLSVLTTLLGEGYADRLLLSHDSIWHWLGRPPAIPEAALPAVKDWHPLHISDDILPDLRRRGITEEQVGQMTVGNPARLFG 323
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141 |     151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321  
                                                                                                                                                                       143-KCX
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3FDK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3FDK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3FDK)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q9RVU2_DEIRA | Q9RVU2)
molecular function
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.
    GO:0046573    lactonohydrolase activity    Catalysis of the hydrolysis of lactone rings (intramolecular cyclic esters) to produce a hydroxyl group and a carboxyl group.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0009056    catabolic process    The chemical reactions and pathways resulting in the breakdown of substances, including the breakdown of carbon compounds with the liberation of energy for use by the cell or organism.

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        Q9RVU2_DEIRA | Q9RVU2: 2zc1 3gtf 3gth 3gti 3gtx 3gu1 3gu2 3gu9 3htw 4j2m 4j35 4j5n

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