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Title :   THE CRYSTAL STRUCTURE OF THE OXIDOREDUCTASE FROM AGROBACTERIUM TUMEFACIENS

Authors :   R. Zhang, X. Xu, H. Zheng, A. Savchenko, A. Edwards, A. Joachimiak, Midw Center For Structural Genomics (Mcsg)

Date :   19 Nov 08 (Deposition) - 23 Dec 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.15

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (2x)
Biol. Unit 2: B  (2x)

Keywords :   Oxidoreductase, Structural Genomics, Psi2, Mcsg, Protein Structure Initiative, Midwest Center For Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Zhang, X. Xu, H. Zheng, A. Savchenko, A. Edwards, A. Joachimiak
The Crystal Structure Of The Oxidoreductase From Agrobacterium Tumefaciens
To Be Published 2008
PubMed: search

Molecule 1 - OXIDOREDUCTASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	AGROBACTERIUM TUMEFACIENS
	Organism Taxid	:	176299
	Strain	:	STR. C58

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A
Biological Unit 2 (2x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 7)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	MG	2	Ligand/Ion	MAGNESIUM ION
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:9 , SER A:11 , TYR A:12 , ALA A:13 , VAL A:31 , ASP A:32 , ALA A:33 , GLY A:34 , GLU A:35 , ARG A:36 , ARG A:37 , ASN A:38 , SER A:44 , HIS A:45 , GLY A:77 , ARG A:78 , VAL A:79 , MET A:108 , GLY A:109 , ASP A:112 , HIS A:130 , CYS A:134 , HIS A:135 , VAL A:228 , GLY A:264 , ASP A:265 , SER A:272 , VAL A:273 , MG A:301 , HOH A:305 , HOH A:310 , HOH A:315 , HOH A:319 , HOH A:341 , HOH A:342 , HOH A:358 , HOH A:486	BINDING SITE FOR RESIDUE FAD A 298
2	AC2	SOFTWARE	HIS A:43 , HIS A:45 , GLU A:138 , SO4 A:300 , HOH A:333 , HOH A:359	BINDING SITE FOR RESIDUE SO4 A 299
3	AC3	SOFTWARE	HIS A:43 , HIS A:45 , GLY A:52 , SO4 A:299	BINDING SITE FOR RESIDUE SO4 A 300
4	AC4	SOFTWARE	PHE A:129 , HIS A:130 , CYS A:131 , FAD A:298	BINDING SITE FOR RESIDUE MG A 301
5	AC5	SOFTWARE	GLY B:9 , SER B:11 , TYR B:12 , ALA B:13 , VAL B:31 , ASP B:32 , ALA B:33 , GLY B:34 , GLU B:35 , ARG B:37 , ASN B:38 , SER B:44 , HIS B:45 , GLY B:77 , ARG B:78 , VAL B:79 , ALA B:107 , MET B:108 , GLY B:109 , ASP B:112 , HIS B:130 , CYS B:134 , HIS B:135 , VAL B:228 , GLY B:264 , ASP B:265 , SER B:272 , VAL B:273 , HOH B:304 , HOH B:308 , HOH B:311 , HOH B:312 , HOH B:368 , HOH B:392 , HOH B:401 , HOH B:413	BINDING SITE FOR RESIDUE FAD B 298
6	AC6	SOFTWARE	SER B:42 , HIS B:43 , HIS B:45 , GLU B:138 , HOH B:326 , HOH B:339 , HOH B:407	BINDING SITE FOR RESIDUE SO4 B 299
7	AC7	SOFTWARE	HIS B:130 , CYS B:131	BINDING SITE FOR RESIDUE MG B 300

Asymmetric Unit

No.	Residues
1	A:131	-	A:134
2	B:131	-	B:134

(no "Cis Peptide Bond" information available for 3FBS)

(no "SAP(SNP)/Variant" information available for 3FBS)

(no "PROSITE Motif" information available for 3FBS)

(no "Exon" information available for 3FBS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:294
 aligned with A9CKI7_AGRFC | A9CKI7 from UniProtKB/TrEMBL  Length:297

    Alignment length:294
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290    
         A9CKI7_AGRFC     1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSILFP 294
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3fbsA01 A:1-114,A:222-294  [code=3.50.50.60, no name defined]                                                     3fbsA02 A:115-221  [code=3.50.50.60, no name defined]                                                      3fbsA01 A:1-114,A:222-294  [code=3.50.50.60, no name defined]             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhh...eeeee...hhhhhh............hhhhhhhhhhhhhh....eeeee..eeeeeee..eeeeee....eeeeeeeee....eee......hhhhh...ee.hhhhhhhhhh..eeeee....hhhhhhhhhhhh.eeeee.......hhhhhhhhhhh..eee...eeeee..eeeee....eeee.eeee..eee....hhhhhh..eeee..eeee............eee.hhhhh...hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3fbs A   1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSILFP 294
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Chain B from PDB  Type:PROTEIN  Length:295
 aligned with A9CKI7_AGRFC | A9CKI7 from UniProtKB/TrEMBL  Length:297

    Alignment length:295
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290     
         A9CKI7_AGRFC     1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSILFPE 295
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3fbsB01 B:1-114,B:222-295  [code=3.50.50.60, no name defined]                                                     3fbsB02 B:115-221  [code=3.50.50.60, no name defined]                                                      3fbsB01 B:1-114,B:222-295  [code=3.50.50.60, no name defined]              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..hhhhhhhhhhhhhh...eeeee.....................hhhhhhhhhhhhhh....eeeee..eeeeeee..eeeeee...eeeeeeeeee....eee......hhhhh...ee.hhhhhhhhhheeeeeee....hhhhhhhhh...eeeeee.......hhhhhhhhhhhh.eee...eeeee...eeee....ee...eeee..eee....hhhhhh..eeee..eeee............eee.hhhhh...hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3fbs B   1 MKFDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDADQHALLAARGVRVETTRIREIAGHADVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAHRSILFPE 295
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3FBS)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 3-Layer(bba) Sandwich (528)

Topology: FAD/NAD(P)-binding domain (373)

Homologous Superfamily: [code=3.50.50.60, no name defined] (373)

C58 (Agrobacterium tumefaciens str) (1)

1a	3fbsB01	B:1-114,B:222-295
1b	3fbsA01	A:1-114,A:222-294
1c	3fbsA02	A:115-221
1d	3fbsB02	B:115-221

(no "Pfam Domain" information available for 3FBS)

Asymmetric Unit(hide GO term definitions)

Chain A,B (A9CKI7_AGRFC | A9CKI7)

molecular function
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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