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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CLP GENE REGULATOR CLGR FROM C. GLUTAMICUM
 
Authors :  S. Russo, J. E. Schweitzer, T. Polen, M. Bott, E. Pohl
Date :  03 Nov 08  (Deposition) - 18 Nov 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,E
Keywords :  Gene Regulator, Helix-Turn-Helix Motif, Transcriptional Activator, Human Pathogen, Transcription Activator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Russo, J. E. Schweitzer, T. Polen, M. Bott, E. Pohl
Crystal Structure Of The Caseinolytic Protease Gene Regulator, A Transcriptional Activator In Actinomycetes
J. Biol. Chem. V. 284 5208 2009
PubMed-ID: 19019826  |  Reference-DOI: 10.1074/JBC.M806591200

(-) Compounds

Molecule 1 - CLP GENE REGULATOR (CLGR)
    Chains: A, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEKEX1
    Expression System Strain: BB1553
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: CLGR_C
    Gene: CG2152, CGL1962
    Organism Common: BREVIBACTERIUM FLAVUM
    Organism Scientific: CORYNEBACTERIUM GLUTAMICUM
    Organism Taxid: 1718

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric/Biological Unit (1, 5)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:45 , PRO A:55 , HOH A:127 , GLU E:60 , ARG E:63 , ASP E:86 , ILE E:89 , HOH E:119BINDING SITE FOR RESIDUE GOL A 500
2AC2SOFTWAREGLU A:27 , ALA A:28 , ALA A:31 , SER A:94 , HOH A:203BINDING SITE FOR RESIDUE GOL A 501
3AC3SOFTWAREHOH E:201BINDING SITE FOR RESIDUE GOL E 502
4AC4SOFTWAREGLU A:60 , LYS A:66BINDING SITE FOR RESIDUE GOL E 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3F52)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3F52)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3F52)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3F52)

(-) Exons   (0, 0)

(no "Exon" information available for 3F52)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:77
 aligned with Q8NP59_CORGL | Q8NP59 from UniProtKB/TrEMBL  Length:107

    Alignment length:77
                                    31        41        51        61        71        81        91       
          Q8NP59_CORGL   22 EPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAGSMALQ 98
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.hhhhhhhhh..hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  3f52 A 22 EPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAGSMALQ 98
                                    31        41        51        61        71        81        91       


Chain E from PDB  Type:PROTEIN  Length:78
 aligned with Q8NP59_CORGL | Q8NP59 from UniProtKB/TrEMBL  Length:107

    Alignment length:78
                                    28        38        48        58        68        78        88        
          Q8NP59_CORGL   19 KAPEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAGSMA 96
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                  3f52 E 19 KAPEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAGSMA 96
                                    28        38        48        58        68        78        88
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3F52)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3F52)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3F52)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,E   (Q8NP59_CORGL | Q8NP59)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

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  3f52
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8NP59_CORGL | Q8NP59: 3f51

(-) Related Entries Specified in the PDB File

3f51 THE SAME PROTEIN IN A DIFFERENT CRYSTAL FORM WITH A DIFFERENT C-TERMINAL CONFORMATION