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(-) Description

Title :  CRYSTAL STRUCTURE OF WOLBACHIA PIPIENTIS ALPHA-DSBA1 T172V
 
Authors :  M. Kurz, B. Heras, J. L. Martin
Date :  02 Nov 08  (Deposition) - 24 Mar 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A
Keywords :  Thioredoxin-Fold, Dsba, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Kurz, I. Iturbe-Ormaetxe, R. Jarrott, S. R. Shouldice, M. A. Wouters, P. Frei, R. Glockshuber, S. L. O'Neill, B. Heras, J. L. Martin
Structural And Functional Characterization Of The Oxidoreductase Alpha-Dsba1 From Wolbachia Pipientis
Antioxid. Redox Signal. V. 11 1485 2009
PubMed-ID: 19265485  |  Reference-DOI: 10.1089/ARS.2008.2420

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET42A
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: WD_1055
    Mutation: YES
    Organism Scientific: WOLBACHIA PIPIENTIS
    Organism Taxid: 66077
    Strain: WMEL
    Synonym: ALPHA-DSBA1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1PGE1Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:51 , TYR A:52 , HIS A:53 , HOH A:355 , HOH A:358 , HOH A:1251 , HOH A:1256 , HOH A:1257BINDING SITE FOR RESIDUE PGE A 227

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:51 -A:54
2A:97 -A:146

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Val A:172 -Pro A:173

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3F4S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3F4S)

(-) Exons   (0, 0)

(no "Exon" information available for 3F4S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:199
 aligned with Q73GA4_WOLPM | Q73GA4 from UniProtKB/TrEMBL  Length:234

    Alignment length:199
                                                                                                                                                                                                                              234  
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227      |  
         Q73GA4_WOLPM    38 TSNELLLPLPNDKLLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDYRGLKAAMLSHCYEKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKLGITATPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVIDKLYGKAIVK--   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.......ee......eeeeeee...hhhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeee.......hhhh.eee...hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3f4s A  20 TSNELLLPLPNDKLLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDYRGLKAAMLSHCYEKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKLGITAVPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVIDKLYGKAIVKLE 218
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3F4S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3F4S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3F4S)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q73GA4_WOLPM | Q73GA4)
molecular function
    GO:0003756    protein disulfide isomerase activity    Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins.
    GO:0019153    protein-disulfide reductase (glutathione) activity    Catalysis of the reaction: 2 glutathione + protein-disulfide = oxidized glutathione + protein-dithiol.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q73GA4_WOLPM | Q73GA4: 3f4r 3f4t

(-) Related Entries Specified in the PDB File

3f4r THE SAME PROTEIN, WILD TYPE
3f4t THE SAME PROTEIN, C97A/C146A VARIANT