3F2W - JenaLib

Title :   CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO FMN, BA2+ SOAK.

Authors :   A. A. Serganov, L. Huang

Date :   30 Oct 08 (Deposition) - 27 Jan 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.45

Chains :   Asym./Biol. Unit : X

Keywords :   Fmn, Riboswitch, Transcription, Barium, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Serganov, L. Huang, D. J. Patel
Coenzyme Recognition And Gene Regulation By A Flavin Mononucleotide Riboswitch.
Nature V. 458 233 2009
PubMed-ID: 19169240 | Reference-DOI: 10.1038/NATURE07642

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 26)

Sites (18, 18)

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	G X:10 , G X:11 , G X:32 , A X:48 , A X:49 , G X:62 , G X:84 , A X:85 , G X:98 , A X:99 , BA X:402	BINDING SITE FOR RESIDUE FMN X 200
02	AC2	SOFTWARE	G X:68	BINDING SITE FOR RESIDUE MG X 309
03	AC3	SOFTWARE	G X:41	BINDING SITE FOR RESIDUE MG X 311
04	AC4	SOFTWARE	G X:91	BINDING SITE FOR RESIDUE MG X 316
05	AC5	SOFTWARE	U X:96 , G X:97 , BA X:412	BINDING SITE FOR RESIDUE BA X 401
06	AC6	SOFTWARE	G X:33 , G X:41 , G X:62 , FMN X:200	BINDING SITE FOR RESIDUE BA X 402
07	AC7	SOFTWARE	U X:100 , G X:101	BINDING SITE FOR RESIDUE BA X 403
08	AC8	SOFTWARE	G X:9 , G X:101 , A X:102	BINDING SITE FOR RESIDUE BA X 404
09	AC9	SOFTWARE	GTP X:1	BINDING SITE FOR RESIDUE BA X 405
10	BC1	SOFTWARE	G X:19	BINDING SITE FOR RESIDUE BA X 406
11	BC2	SOFTWARE	G X:16 , G X:17	BINDING SITE FOR RESIDUE BA X 408
12	BC3	SOFTWARE	G X:28	BINDING SITE FOR RESIDUE BA X 409
13	BC4	SOFTWARE	G X:93	BINDING SITE FOR RESIDUE BA X 410
14	BC5	SOFTWARE	BA X:401	BINDING SITE FOR RESIDUE BA X 412
15	BC6	SOFTWARE	G X:35 , G X:36 , A X:40	BINDING SITE FOR RESIDUE BA X 413
16	BC7	SOFTWARE	G X:70	BINDING SITE FOR RESIDUE BA X 414
17	BC8	SOFTWARE	G X:51 , U X:52	BINDING SITE FOR RESIDUE BA X 415
18	BC9	SOFTWARE	G X:88 , U X:89 , A X:92	BINDING SITE FOR RESIDUE BA X 416

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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	UniProt sequence: complete aligned part

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Chain X from PDB  Type:RNA  Length:109
                                                                                                                                             
                 3f2w X   1 gGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAAGUAGCUUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUc 112
                            |       10        20        30        40        50  ||    63        73        83        93       103        |
                            |                                                  53|                                                    112-CCC
                            1-GTP                                               57

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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