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(-) Description

Title :  CRYSTAL STRUCTURE OF YELLOWSTONE SIRV COAT PROTEIN C-TERMINUS
 
Authors :  R. E. Taurog, B. R. Szymczyna, J. R. Williamson, J. E. Johnson
Date :  29 Oct 08  (Deposition) - 21 Apr 09  (Release) - 21 Mar 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.67
Chains :  Asym./Biol. Unit :  A
Keywords :  Four Helix Bundle, Virus Coat Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. R. Szymczyna, R. E. Taurog, M. J. Young, J. C. Snyder, J. E. Johnson, J. R. Williamson
Synergy Of Nmr, Computation, And X-Ray Crystallography For Structural Biology.
Structure V. 17 499 2009
PubMed-ID: 19368883  |  Reference-DOI: 10.1016/J.STR.2009.03.001

(-) Compounds

Molecule 1 - SIRV COAT PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET31A
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN
    Organism Scientific: SULFOLOBUS ISLANDICUS RUDIVIRUS 1 VARIANT YNP
    Organism Taxid: 187213

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CIT1Ligand/IonCITRIC ACID

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:82 , ARG A:85 , ALA A:86 , TYR A:106 , TYR A:107 , PHE A:111BINDING SITE FOR RESIDUE CIT A 200

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:83
 aligned with D0VX05_9VIRU | D0VX05 from UniProtKB/TrEMBL  Length:100

    Alignment length:83
                                    17        27        37        47        57        67        77        87   
         D0VX05_9VIRU     8 FTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARALNRLGGGPALVNMINGLKAYYISAFNANPTVLDAVTDIITGSPTGYVS  90
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 3f2e A  52 FTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARALNRLGGGPALVNMINGLKAYYISAFNANPTVLDAVTDIITGSPTGYVS 134
                                    61        71        81        91       101       111       121       131
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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