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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PYRUVATE DEHYDROGENASE (E1P) COMPONENT OF HUMAN PYRUVATE DEHYDROGENASE COMPLEX
 
Authors :  M. Kato, R. M. Wynn, J. L. Chuang, S. -C. Tso, M. Machius, J. Li, D. T. Chuan
Date :  16 Oct 08  (Deposition) - 25 Nov 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Heterotetramer; Thiamine Diphosphate-Dependent Enzyme; Disease Mutation; Glycolysis; Leigh Syndrome; Mitochondrion; Oxidoreductase; Phosphoprotein; Alternative Splicing; Polymorphism; Pyruvate; Thiamine Pyrophosphate; Transit Peptide, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. Kato, R. M. Wynn, J. L. Chuang, S. C. Tso, M. Machius, J. Li, D. T. Chuan
Structural Basis For Inactivation Of The Human Pyruvate Dehydrogenase Complex By Phosphorylation: Role Of Disordere Phosphorylation Loops.
Structure V. 16 1849 2008
PubMed-ID: 19081061  |  Reference-DOI: 10.1016/J.STR.2008.10.010

(-) Compounds

Molecule 1 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA, SOMATIC FORM, MITOCHONDRIAL
    ChainsA, C, E, G
    EC Number1.2.4.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentE1P-ALPHA
    GenePDHA1, PHE1A
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Other DetailsWILD TYPE WITH BOUND MN-THDP
    SynonymPYRUVATE DEHYDROGENASE (E1P) ALPHA SUBUNIT;
PDHE1-A TYPE I
 
Molecule 2 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT BETA, MITOCHONDRIAL
    ChainsB, D, F, H
    EC Number1.2.4.1
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentE1P-BETA
    GenePDHB, PHE1B
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymPYRUVATE DEHYDROGENASE (E1P) BETA SUBUNIT;
PDHE1-B

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)ABCD    
Biological Unit 2 (1x)    EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 16)

Asymmetric Unit (4, 16)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2K4Ligand/IonPOTASSIUM ION
3MN4Ligand/IonMANGANESE (II) ION
4TPP4Ligand/IonTHIAMINE DIPHOSPHATE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2K-1Ligand/IonPOTASSIUM ION
3MN-1Ligand/IonMANGANESE (II) ION
4TPP2Ligand/IonTHIAMINE DIPHOSPHATE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2K-1Ligand/IonPOTASSIUM ION
3MN-1Ligand/IonMANGANESE (II) ION
4TPP2Ligand/IonTHIAMINE DIPHOSPHATE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP C:167 , ASN C:196 , TYR C:198 , TPP C:1002 , HOH C:2234BINDING SITE FOR RESIDUE MN C 1001
02AC2SOFTWAREGLU B:28 , ILE B:57 , GLU B:59 , PHE B:85 , GLN B:88 , TYR C:89 , ARG C:90 , GLY C:136 , VAL C:138 , GLY C:166 , ASP C:167 , GLY C:168 , ALA C:169 , ASN C:196 , TYR C:198 , GLY C:199 , MET C:200 , HIS C:263 , MN C:1001 , HOH C:2200 , HOH C:2222 , HOH C:2234 , HOH C:2277 , HOH C:2489BINDING SITE FOR RESIDUE TPP C 1002
03AC3SOFTWAREALA B:160 , ILE B:161 , ASP B:163 , HOH B:2133 , HOH B:2301BINDING SITE FOR RESIDUE K B 1003
04AC4SOFTWAREASP A:167 , ASN A:196 , TYR A:198 , TPP A:1005 , HOH A:2039BINDING SITE FOR RESIDUE MN A 1004
05AC5SOFTWARETYR A:89 , ARG A:90 , GLY A:136 , VAL A:138 , GLY A:166 , ASP A:167 , GLY A:168 , ALA A:169 , ASN A:196 , TYR A:198 , GLY A:199 , HIS A:263 , MN A:1004 , HOH A:2039 , HOH A:2043 , HOH A:2122 , HOH A:2149 , HOH A:2346 , GLU D:28 , ILE D:57 , GLU D:59 , PHE D:85 , GLN D:88BINDING SITE FOR RESIDUE TPP A 1005
06AC6SOFTWAREARG D:75 , ALA D:160 , ILE D:161 , ASP D:163 , HOH D:2065 , HOH D:2159BINDING SITE FOR RESIDUE K D 1006
07AC7SOFTWAREASP G:167 , ASN G:196 , TYR G:198 , TPP G:1008 , HOH G:2294BINDING SITE FOR RESIDUE MN G 1007
08AC8SOFTWAREGLU F:28 , ILE F:57 , GLU F:59 , MET F:81 , PHE F:85 , GLN F:88 , TYR G:89 , ARG G:90 , GLY G:136 , VAL G:138 , GLY G:166 , ASP G:167 , GLY G:168 , ALA G:169 , ASN G:196 , TYR G:198 , GLY G:199 , MET G:200 , HIS G:263 , MN G:1007 , HOH G:2062 , HOH G:2249 , HOH G:2294 , HOH G:2355 , HOH G:2447BINDING SITE FOR RESIDUE TPP G 1008
09AC9SOFTWAREARG F:75 , ALA F:160 , ILE F:161 , ASP F:163 , HOH F:2116 , HOH F:2636BINDING SITE FOR RESIDUE K F 1009
10BC1SOFTWAREASP E:167 , ASN E:196 , TYR E:198 , TPP E:1011 , HOH E:2223BINDING SITE FOR RESIDUE MN E 1010
11BC2SOFTWARETYR E:89 , ARG E:90 , GLY E:136 , VAL E:138 , GLY E:166 , ASP E:167 , GLY E:168 , ALA E:169 , ASN E:196 , TYR E:198 , GLY E:199 , MET E:200 , HIS E:263 , MN E:1010 , HOH E:2130 , HOH E:2179 , HOH E:2223 , HOH E:2391 , HOH E:2500 , GLU H:28 , ILE H:57 , GLU H:59 , PHE H:85 , GLN H:88BINDING SITE FOR RESIDUE TPP E 1011
12BC3SOFTWAREALA H:160 , ILE H:161 , ASP H:163 , HOH H:2386 , HOH H:2397BINDING SITE FOR RESIDUE K H 1012
13BC4SOFTWARELYS A:153 , TRP A:185 , LEU A:187 , HOH A:2650 , HOH A:2946 , HOH A:3205 , ASP B:49 , ILE B:53BINDING SITE FOR RESIDUE GOL A 1101
14BC5SOFTWARELYS C:153 , TRP C:185 , HOH C:2477 , HOH C:2998 , HOH C:3876 , ASP D:49 , ILE D:53 , HOH D:2905BINDING SITE FOR RESIDUE GOL C 1102
15BC6SOFTWARELYS E:153 , LEU E:187 , HOH E:2656 , HOH E:3689 , HOH E:3731 , ASP F:49 , ILE F:53BINDING SITE FOR RESIDUE GOL E 1103
16BC7SOFTWARELYS G:153 , LEU G:187 , HOH G:3129 , HOH G:3379 , ASP H:49 , ILE H:53 , HOH H:2848BINDING SITE FOR RESIDUE GOL G 1104

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3EXE)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Gly A:133 -Gly A:134
2Arg B:242 -Pro B:243
3Gly C:133 -Gly C:134
4Arg D:242 -Pro D:243
5Gly E:133 -Gly E:134
6Arg F:242 -Pro F:243
7Gly G:133 -Gly G:134
8Arg H:242 -Pro H:243

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (25, 100)

Asymmetric Unit (25, 100)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_004967L31VODPB_HUMANPolymorphism  ---B/D/F/HL1V
02UniProtVAR_004949R72CODPA_HUMANDisease (PDHAD)863224148A/C/E/GR43C
03UniProtVAR_004950H113DODPA_HUMANDisease (PDHAD)  ---A/C/E/GH84D
04UniProtVAR_030954Y132CODPB_HUMANDisease (PDHBD)28935769B/D/F/HY102C
05UniProtVAR_069381A136TODPA_HUMANDisease138727886A/C/E/GA107T
06UniProtVAR_004951G162RODPA_HUMANDisease (PDHAD)866868610A/C/E/GG133R
07UniProtVAR_004952V167MODPA_HUMANDisease (PDHAD)  ---A/C/E/GV138M
08UniProtVAR_004953A199TODPA_HUMANDisease (PDHAD)  ---A/C/E/GA170T
09UniProtVAR_004954F205LODPA_HUMANDisease (PDHAD)137853254A/C/E/GF176L
10UniProtVAR_004955M210VODPA_HUMANDisease (PDHAD)794727843A/C/E/GM181V
11UniProtVAR_004956P217LODPA_HUMANDisease (PDHAD)  ---A/C/E/GP188L
12UniProtVAR_004957T231AODPA_HUMANDisease (PDHAD)  ---A/C/E/GT202A
13UniProtVAR_021053Y243NODPA_HUMANDisease (PDHAD)137853255A/C/E/GY214N
14UniProtVAR_004958D258AODPA_HUMANDisease (PDHAD)137853253A/C/E/GD229A
15UniProtVAR_004959R263GODPA_HUMANDisease (PDHAD)28936081A/C/E/GR234G
16UniProtVAR_004960R263QODPA_HUMANDisease (PDHAD)  ---A/C/E/GR234Q
17UniProtVAR_021054M282LODPA_HUMANPolymorphism2229137A/C/E/GM253L
18UniProtVAR_021055R288HODPA_HUMANDisease (PDHAD)137853258A/C/E/GR259H
19UniProtVAR_004961H292LODPA_HUMANDisease (PDHAD)  ---A/C/E/GH263L
20UniProtVAR_004962R302CODPA_HUMANDisease (PDHAD)137853252A/C/E/GR273C
21UniProtVAR_004963R302HODPA_HUMANDisease (PDHAD)  ---A/C/E/GR273H
22UniProtVAR_021056D315NODPA_HUMANDisease (PDHAD)28935187A/C/E/GD286N
23UniProtVAR_050436E333DODPA_HUMANPolymorphism2228067A/C/E/GE304D
24UniProtVAR_021058P344SODPB_HUMANDisease (PDHBD)28933391B/D/F/HP314S
25UniProtVAR_004966R378HODPA_HUMANDisease (PDHAD)137853250A/C/E/GR349H

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (25, 50)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_004967L31VODPB_HUMANPolymorphism  ---B/DL1V
02UniProtVAR_004949R72CODPA_HUMANDisease (PDHAD)863224148A/CR43C
03UniProtVAR_004950H113DODPA_HUMANDisease (PDHAD)  ---A/CH84D
04UniProtVAR_030954Y132CODPB_HUMANDisease (PDHBD)28935769B/DY102C
05UniProtVAR_069381A136TODPA_HUMANDisease138727886A/CA107T
06UniProtVAR_004951G162RODPA_HUMANDisease (PDHAD)866868610A/CG133R
07UniProtVAR_004952V167MODPA_HUMANDisease (PDHAD)  ---A/CV138M
08UniProtVAR_004953A199TODPA_HUMANDisease (PDHAD)  ---A/CA170T
09UniProtVAR_004954F205LODPA_HUMANDisease (PDHAD)137853254A/CF176L
10UniProtVAR_004955M210VODPA_HUMANDisease (PDHAD)794727843A/CM181V
11UniProtVAR_004956P217LODPA_HUMANDisease (PDHAD)  ---A/CP188L
12UniProtVAR_004957T231AODPA_HUMANDisease (PDHAD)  ---A/CT202A
13UniProtVAR_021053Y243NODPA_HUMANDisease (PDHAD)137853255A/CY214N
14UniProtVAR_004958D258AODPA_HUMANDisease (PDHAD)137853253A/CD229A
15UniProtVAR_004959R263GODPA_HUMANDisease (PDHAD)28936081A/CR234G
16UniProtVAR_004960R263QODPA_HUMANDisease (PDHAD)  ---A/CR234Q
17UniProtVAR_021054M282LODPA_HUMANPolymorphism2229137A/CM253L
18UniProtVAR_021055R288HODPA_HUMANDisease (PDHAD)137853258A/CR259H
19UniProtVAR_004961H292LODPA_HUMANDisease (PDHAD)  ---A/CH263L
20UniProtVAR_004962R302CODPA_HUMANDisease (PDHAD)137853252A/CR273C
21UniProtVAR_004963R302HODPA_HUMANDisease (PDHAD)  ---A/CR273H
22UniProtVAR_021056D315NODPA_HUMANDisease (PDHAD)28935187A/CD286N
23UniProtVAR_050436E333DODPA_HUMANPolymorphism2228067A/CE304D
24UniProtVAR_021058P344SODPB_HUMANDisease (PDHBD)28933391B/DP314S
25UniProtVAR_004966R378HODPA_HUMANDisease (PDHAD)137853250A/CR349H

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (25, 50)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_004967L31VODPB_HUMANPolymorphism  ---F/HL1V
02UniProtVAR_004949R72CODPA_HUMANDisease (PDHAD)863224148E/GR43C
03UniProtVAR_004950H113DODPA_HUMANDisease (PDHAD)  ---E/GH84D
04UniProtVAR_030954Y132CODPB_HUMANDisease (PDHBD)28935769F/HY102C
05UniProtVAR_069381A136TODPA_HUMANDisease138727886E/GA107T
06UniProtVAR_004951G162RODPA_HUMANDisease (PDHAD)866868610E/GG133R
07UniProtVAR_004952V167MODPA_HUMANDisease (PDHAD)  ---E/GV138M
08UniProtVAR_004953A199TODPA_HUMANDisease (PDHAD)  ---E/GA170T
09UniProtVAR_004954F205LODPA_HUMANDisease (PDHAD)137853254E/GF176L
10UniProtVAR_004955M210VODPA_HUMANDisease (PDHAD)794727843E/GM181V
11UniProtVAR_004956P217LODPA_HUMANDisease (PDHAD)  ---E/GP188L
12UniProtVAR_004957T231AODPA_HUMANDisease (PDHAD)  ---E/GT202A
13UniProtVAR_021053Y243NODPA_HUMANDisease (PDHAD)137853255E/GY214N
14UniProtVAR_004958D258AODPA_HUMANDisease (PDHAD)137853253E/GD229A
15UniProtVAR_004959R263GODPA_HUMANDisease (PDHAD)28936081E/GR234G
16UniProtVAR_004960R263QODPA_HUMANDisease (PDHAD)  ---E/GR234Q
17UniProtVAR_021054M282LODPA_HUMANPolymorphism2229137E/GM253L
18UniProtVAR_021055R288HODPA_HUMANDisease (PDHAD)137853258E/GR259H
19UniProtVAR_004961H292LODPA_HUMANDisease (PDHAD)  ---E/GH263L
20UniProtVAR_004962R302CODPA_HUMANDisease (PDHAD)137853252E/GR273C
21UniProtVAR_004963R302HODPA_HUMANDisease (PDHAD)  ---E/GR273H
22UniProtVAR_021056D315NODPA_HUMANDisease (PDHAD)28935187E/GD286N
23UniProtVAR_050436E333DODPA_HUMANPolymorphism2228067E/GE304D
24UniProtVAR_021058P344SODPB_HUMANDisease (PDHBD)28933391F/HP314S
25UniProtVAR_004966R378HODPA_HUMANDisease (PDHAD)137853250E/GR349H

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3EXE)

(-) Exons   (9, 36)

Asymmetric Unit (9, 36)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1bENST000003027461bENSE00001931564chr3:58419579-5841949585ODPB_HUMAN1-14140--
1.1jENST000003027461jENSE00001168306chr3:58419411-5841935854ODPB_HUMAN15-32184B:1-2
D:1-2
F:1-2
H:1-2
2
2
2
2
1.1lENST000003027461lENSE00001168363chr3:58417711-58417604108ODPB_HUMAN33-68364B:3-38
D:3-38
F:3-38
H:3-38
36
36
36
36
1.1nENST000003027461nENSE00001168356chr3:58417520-5841745863ODPB_HUMAN69-89214B:39-59
D:39-59
F:39-59
H:39-59
21
21
21
21
1.1qENST000003027461qENSE00001168351chr3:58417355-5841732036ODPB_HUMAN90-101124B:60-71
D:60-71
F:60-71
H:60-71
12
12
12
12
1.1tENST000003027461tENSE00001168343chr3:58416669-58416384286ODPB_HUMAN102-197964B:72-167
D:72-167
F:72-167
H:72-167
96
96
96
96
1.2bENST000003027462bENSE00001168337chr3:58415965-58415855111ODPB_HUMAN197-234384B:167-204
D:167-204
F:167-204
H:167-204
38
38
38
38
1.2eENST000003027462eENSE00001168326chr3:58415526-5841543592ODPB_HUMAN234-264314B:204-234
D:204-234
F:204-234
H:204-234
31
31
31
31
1.3aENST000003027463aENSE00001168314chr3:58414341-58414200142ODPB_HUMAN265-312484B:235-282
D:235-282
F:235-282
H:235-282
48
48
48
48
1.3hENST000003027463hENSE00001835890chr3:58413906-58413357550ODPB_HUMAN312-359484B:282-329
D:282-329
F:282-329
H:282-329
48
48
48
48

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:363
 aligned with ODPA_HUMAN | P08559 from UniProtKB/Swiss-Prot  Length:390

    Alignment length:363
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387   
           ODPA_HUMAN    28 RNFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS 390
               SCOP domains d3exea_ A: E1-beta subunit of pyruvate dehydrogenase (PP module)                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 3exeA00 A:-1-361  [code=3.40.50.970, no name defined]                                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee....eee........eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhh....eee....hhhhhhhh..hhhhhhhhhh..........hhhhh..............hhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhh..eeeeeee..ee..eehhhhh...hhhhh.....eeeee..hhhhhhhhhhhhhhhhhh....eeeeee.................hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..........eeee......eeee.. Sec.struct. author
             SAPs(SNPs) (1) --------------------------------------------C----------------------------------------D----------------------T-------------------------R----M-------------------------------T-----L----V------L-------------A-----------N--------------A----G------------------L-----H---L---------C------------N-----------------D--------------------------------------------H------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q--------------------------------------H---------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3exe A  -1 HMFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS 361
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358   

Chain B from PDB  Type:PROTEIN  Length:329
 aligned with ODPB_HUMAN | P11177 from UniProtKB/Swiss-Prot  Length:359

    Alignment length:329
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         
           ODPB_HUMAN    31 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI 359
               SCOP domains d3exeb1 B:1-185 automated matches                                                                                                                                                        d3exeb2 B:186-329 E1-beta subunit of pyruvate dehydrogenase, C-domain                                                                            SCOP domains
               CATH domains -3exeB01 B:2-194  [code=3.40.50.970, no name defined]                                                                                                                                             3exeB02 B:195-328  [code=3.40.50.920, no name defined]                                                                                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhh..eeeee..............hhhhhhh...eee...hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhh...hhhhhh........eeeee.......hhhhh..hhhhhhh....eee...hhhhhhhhhhhhhhh...eeeee.......eee.hhhhhh..........eeee....eeeee..hhhhhhhhhhhhhhh....eeeee..eee..hhhhhhhhhhhhh.eeee.......hhhhhhhhhhhhh.hhhhh....eee.........hhhhhhh...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) V----------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S--------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.Exon 1.1l  PDB: B:3-38              Exon 1.1n            Exon 1.1q   Exon 1.1t  PDB: B:72-167 UniProt: 102-197                                                       ------------------------------------Exon 1.2e  PDB: B:204-234      Exon 1.3a  PDB: B:235-282 UniProt: 265-312      ----------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.2b  PDB: B:167-204             -----------------------------------------------------------------------------Exon 1.3h  PDB: B:282-329 UniProt: 312-359       Transcript 1 (2)
                 3exe B   1 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI 329
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320         

Chain C from PDB  Type:PROTEIN  Length:362
 aligned with ODPA_HUMAN | P08559 from UniProtKB/Swiss-Prot  Length:390

    Alignment length:362
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388  
           ODPA_HUMAN    29 NFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS 390
               SCOP domains d3exec_ C: E1-beta subunit of pyruvate dehydrogenase (PP module)                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee....eee........eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhh.....eee....hhhhhhhh..hhhhhhhhhh.............................hhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhh...eeeeeee..ee..eehhhhh...hhhhh.....eeeee..hhhhhhhhhhhhhhhhhh....eeeeee.................hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..........eeee......eeee.. Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------C----------------------------------------D----------------------T-------------------------R----M-------------------------------T-----L----V------L-------------A-----------N--------------A----G------------------L-----H---L---------C------------N-----------------D--------------------------------------------H------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q--------------------------------------H---------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3exe C   0 MFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS 361
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359  

Chain D from PDB  Type:PROTEIN  Length:329
 aligned with ODPB_HUMAN | P11177 from UniProtKB/Swiss-Prot  Length:359

    Alignment length:329
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         
           ODPB_HUMAN    31 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI 359
               SCOP domains d3exed1 D:1-185 automated matches                                                                                                                                                        d3exed2 D:186-329 E1-beta subunit of pyruvate dehydrogenase, C-domain                                                                            SCOP domains
               CATH domains -3exeD01 D:2-194  [code=3.40.50.970, no name defined]                                                                                                                                             3exeD02 D:195-328  [code=3.40.50.920, no name defined]                                                                                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhh..eeeee..............hhhhhhh...eee...hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh..hhhhhh........eeeee.......hhhhh..hhhhhhh....eee...hhhhhhhhhhhhhhh...eeeee.......eee.hhhhhh..........eeee....eeeee..hhhhhhhhhhhhhhh....eeeee..eee..hhhhhhhhhhhhh.eeee.......hhhhhhhhhhhhh.hhhhh....eee.........hhhhhhh...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) V----------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S--------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.Exon 1.1l  PDB: D:3-38              Exon 1.1n            Exon 1.1q   Exon 1.1t  PDB: D:72-167 UniProt: 102-197                                                       ------------------------------------Exon 1.2e  PDB: D:204-234      Exon 1.3a  PDB: D:235-282 UniProt: 265-312      ----------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.2b  PDB: D:167-204             -----------------------------------------------------------------------------Exon 1.3h  PDB: D:282-329 UniProt: 312-359       Transcript 1 (2)
                 3exe D   1 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI 329
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320         

Chain E from PDB  Type:PROTEIN  Length:361
 aligned with ODPA_HUMAN | P08559 from UniProtKB/Swiss-Prot  Length:390

    Alignment length:361
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389 
           ODPA_HUMAN    30 FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS 390
               SCOP domains d3exee_ E: E1-beta subunit of pyruvate dehydrogenase (PP module)                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....eee........eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhh.....eee....hhhhhhhh..hhhhhhhhhh.............................hhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhh...eeeeeee..ee..eehhhhh...hhhhh.....eeeee..hhhhhhhhhhhhhhhhhh....eeeeee.................hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..........eeee......eeee.. Sec.struct. author
             SAPs(SNPs) (1) ------------------------------------------C----------------------------------------D----------------------T-------------------------R----M-------------------------------T-----L----V------L-------------A-----------N--------------A----G------------------L-----H---L---------C------------N-----------------D--------------------------------------------H------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q--------------------------------------H---------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3exe E   1 FANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS 361
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360 

Chain F from PDB  Type:PROTEIN  Length:329
 aligned with ODPB_HUMAN | P11177 from UniProtKB/Swiss-Prot  Length:359

    Alignment length:329
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         
           ODPB_HUMAN    31 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI 359
               SCOP domains d3exef1 F:1-185 automated matches                                                                                                                                                        d3exef2 F:186-329 E1-beta subunit of pyruvate dehydrogenase, C-domain                                                                            SCOP domains
               CATH domains -3exeF01 F:2-194  [code=3.40.50.970, no name defined]                                                                                                                                             3exeF02 F:195-328  [code=3.40.50.920, no name defined]                                                                                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhh..eeeee..............hhhhhhh...eee...hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhh...hhhhhh........eeeee.......hhhhh..hhhhhhh....eee...hhhhhhhhhhhhhhh...eeeeehhhhh..eee.hhhhhh..........eeee....eeeee..hhhhhhhhhhhhhhhh...eeeee..eee..hhhhhhhhhhhhh.eeee.......hhhhhhhhhhhhh.hhhhh....eee.........hhhhhhh...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) V----------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S--------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.Exon 1.1l  PDB: F:3-38              Exon 1.1n            Exon 1.1q   Exon 1.1t  PDB: F:72-167 UniProt: 102-197                                                       ------------------------------------Exon 1.2e  PDB: F:204-234      Exon 1.3a  PDB: F:235-282 UniProt: 265-312      ----------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.2b  PDB: F:167-204             -----------------------------------------------------------------------------Exon 1.3h  PDB: F:282-329 UniProt: 312-359       Transcript 1 (2)
                 3exe F   1 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI 329
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320         

Chain G from PDB  Type:PROTEIN  Length:362
 aligned with ODPA_HUMAN | P08559 from UniProtKB/Swiss-Prot  Length:390

    Alignment length:362
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388  
           ODPA_HUMAN    29 NFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS 390
               SCOP domains d3exeg_ G: E1-beta subunit of pyruvate dehydrogenase (PP module)                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee....eee........eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhh.....eee....hhhhhhhh..hhhhhhhhhh.............................hhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhh..eeeeeee..ee..eehhhhh...hhhhh.....eeeee..hhhhhhhhhhhhhhhhhh....eeeeee.................hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..........eeee......eeee.. Sec.struct. author
             SAPs(SNPs) (1) -------------------------------------------C----------------------------------------D----------------------T-------------------------R----M-------------------------------T-----L----V------L-------------A-----------N--------------A----G------------------L-----H---L---------C------------N-----------------D--------------------------------------------H------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q--------------------------------------H---------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3exe G   0 MFANDATFEIKKCDLHRLEEGPPVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAKNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHSMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASVEELKEIDVEVRKEIEDAAQFATADPEPPLEELGYHIYSSDPPFEVRGANQWIKFKSVS 361
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359  

Chain H from PDB  Type:PROTEIN  Length:329
 aligned with ODPB_HUMAN | P11177 from UniProtKB/Swiss-Prot  Length:359

    Alignment length:329
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         
           ODPB_HUMAN    31 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI 359
               SCOP domains d3exeh1 H:1-185 automated matches                                                                                                                                                        d3exeh2 H:186-329 E1-beta subunit of pyruvate dehydrogenase, C-domain                                                                            SCOP domains
               CATH domains -3exeH01 H:2-194  [code=3.40.50.970, no name defined]                                                                                                                                             3exeH02 H:195-328  [code=3.40.50.920, no name defined]                                                                                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeehhhhhhhhhhhhhhhh..eeeee..............hhhhhhh...eee...hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhh...hhhhhh........eeeee.......hhhhh..hhhhhhh....eee...hhhhhhhhhhhhhhh...eeeee.......eee.hhhhhh..........eeee....eeeee..hhhhhhhhhhhhhhh....eeeee..eee..hhhhhhhhhhhhh.eeee.......hhhhhhhhhhhhh.hhhhh....eee.........hhhhhhh...hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) V----------------------------------------------------------------------------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S--------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) 1.Exon 1.1l  PDB: H:3-38              Exon 1.1n            Exon 1.1q   Exon 1.1t  PDB: H:72-167 UniProt: 102-197                                                       ------------------------------------Exon 1.2e  PDB: H:204-234      Exon 1.3a  PDB: H:235-282 UniProt: 265-312      ----------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.2b  PDB: H:167-204             -----------------------------------------------------------------------------Exon 1.3h  PDB: H:282-329 UniProt: 312-359       Transcript 1 (2)
                 3exe H   1 LQVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI 329
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 12)

Asymmetric Unit

(-) CATH Domains  (2, 9)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3EXE)

(-) Gene Ontology  (25, 43)

Asymmetric Unit(hide GO term definitions)
Chain A,C,E,G   (ODPA_HUMAN | P08559)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016624    oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces a disulfide.
    GO:0034604    pyruvate dehydrogenase (NAD+) activity    Catalysis of the reaction: pyruvate + CoA + NAD+ = acetyl-CoA + CO2 + NADH.
    GO:0004739    pyruvate dehydrogenase (acetyl-transferring) activity    Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2.
    GO:0004738    pyruvate dehydrogenase activity    Catalysis of the oxidative decarboxylation of pyruvate.
biological process
    GO:0006086    acetyl-CoA biosynthetic process from pyruvate    The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0046487    glyoxylate metabolic process    The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0061732    mitochondrial acetyl-CoA biosynthetic process from pyruvate    The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate in the mitochondrion. The process begins with the transport of pyruvate from the cytosol to the mitochondrion where it is subsequently decarboxylated to form acetyl-CoA.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006090    pyruvate metabolic process    The chemical reactions and pathways involving pyruvate, 2-oxopropanoate.
    GO:0010510    regulation of acetyl-CoA biosynthetic process from pyruvate    Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.
    GO:0006099    tricarboxylic acid cycle    A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
cellular component
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0045254    pyruvate dehydrogenase complex    Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3).

Chain B,D,F,H   (ODPB_HUMAN | P11177)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0034604    pyruvate dehydrogenase (NAD+) activity    Catalysis of the reaction: pyruvate + CoA + NAD+ = acetyl-CoA + CO2 + NADH.
    GO:0004739    pyruvate dehydrogenase (acetyl-transferring) activity    Catalysis of the reaction: pyruvate + lipoamide = S-acetyldihydrolipoamide + CO2.
    GO:0004738    pyruvate dehydrogenase activity    Catalysis of the oxidative decarboxylation of pyruvate.
biological process
    GO:0006086    acetyl-CoA biosynthetic process from pyruvate    The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0006006    glucose metabolic process    The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides.
    GO:0046487    glyoxylate metabolic process    The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0061732    mitochondrial acetyl-CoA biosynthetic process from pyruvate    The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate in the mitochondrion. The process begins with the transport of pyruvate from the cytosol to the mitochondrion where it is subsequently decarboxylated to form acetyl-CoA.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006090    pyruvate metabolic process    The chemical reactions and pathways involving pyruvate, 2-oxopropanoate.
    GO:0010510    regulation of acetyl-CoA biosynthetic process from pyruvate    Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate.
    GO:0006099    tricarboxylic acid cycle    A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
cellular component
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0045254    pyruvate dehydrogenase complex    Complex that carries out the oxidative decarboxylation of pyruvate to form acetyl-CoA; comprises subunits possessing three catalytic activities: pyruvate dehydrogenase (E1), dihydrolipoamide S-acetyltransferase (E2), and dihydrolipoamide dehydrogenase (E3).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ODPA_HUMAN | P085591ni4 2ozl 3exf 3exg 3exh 3exi
        ODPB_HUMAN | P111771ni4 2ozl 3exf 3exg 3exh 3exi

(-) Related Entries Specified in the PDB File

3exf 3exg 3exh 3exi