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(-) Description

Title :  CRYSTAL STRUCTURE OF ANTHRAX-NEUTRALIZING SINGLE-CHAIN ANTIBODY 14B7
 
Authors :  A. F. Monzingo, J. A. Maynard, B. L. Iverson, G. Georgiou, J. D. Robertus
Date :  06 Oct 08  (Deposition) - 28 Apr 09  (Release) - 28 Apr 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym./Biol. Unit :  F
Keywords :  Single-Chain Fv, Monoclonal Antibody, Immunoglobulin, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. E. Leysath, A. F. Monzingo, J. A. Maynard, J. Barnett, G. Georgiou, B. L. Iverson, J. D. Robertus
Crystal Structure Of The Engineered Neutralizing Antibody M18 Complexed To Domain 4 Of The Anthrax Protective Antigen.
J. Mol. Biol. V. 387 680 2009
PubMed-ID: 19361425  |  Reference-DOI: 10.1016/J.JMB.2009.02.003
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ANTIBODY 14B7* LIGHT CHAIN AND ANTIBODY 14B7* HEAVY CHAIN LINKED WITH A SYNTHETIC (GGGGS)4 LINKER
    Chains: F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PAK400
    Expression System Strain: JUDE-1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3ESU)

(-) Sites  (0, 0)

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(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1F:23 -F:88
2F:1022 -F:1092

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu F:94 -Pro F:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain F from PDB  Type:PROTEIN  Length:224
                                                                                                                                                                                                                                                                  
               SCOP domains d3esuf1 F:1-106 automated matches                                                                         --d3esuf2 F:1004-1113 automated matches                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------3esuF02 F:1004-1103 Immunoglobulins                                                                       ---------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eeee.....eeeeeee.......eeeeee.....eeeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeee...ee...eee.....eeeeee....hhhhheeeeeee......eeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeeee........ee...eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
               3esu F     1 DIVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSGLLRYAMDYWGQGTSVTVSS  1113
                                    10        20        30        40        50        60        70        80        90       100      1005      1015      1025      1035      1045      1054      1064      1074     1082B|     1091     1100A|     1109    
                                                                                                                                     108|                                            1052A                          1082A||              1100A|             
                                                                                                                                     1004                                                                            1082B|               1100B             
                                                                                                                                                                                                                      1082C
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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  Cis Peptide Bonds
    Leu F:94 - Pro F:95   [ RasMol ]  
 

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 Related Entries

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(-) Related Entries Specified in the PDB File

3esv CRYSTAL STRUCTURE OF THE ENGINEERED NEUTRALIZING ANTIBODY M18
3et9 CRYSTAL STRUCTURE OF THE ENGINEERED NEUTRALIZING ANTIBODY 1H
3etb CRYSTAL STRUCTURE OF THE ENGINEERED NEUTRALIZING ANTIBODY M18 COMPLEXED WITH ANTHRAX PROTECTIVE ANTIGEN DOMAIN 4