3EO4 - JenaLib

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Title :   THE CRYSTAL STRUCTURE OF A DOMAIN FROM METHANOCALDOCOCCUS JANNASCHII DSM 2661

Authors :   K. Tan, C. Hatzos, L. Freeman, A. Joachimiak, Midwest Center For Str Genomics (Mcsg)

Date :   26 Sep 08 (Deposition) - 14 Oct 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.19

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Apc60792. 2, Mj_1062, Methanocaldococcus Jannaschii Dsm 2661, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Tan, C. Hatzos, L. Freeman, A. Joachimiak
The Crystal Structure Of A Domain From Methanocaldococcus Jannaschii Dsm 2661
To Be Published
PubMed: search

Molecule 1 - UNCHARACTERIZED PROTEIN MJ1062
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG19
	Expression System Strain	:	BL21
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	METHANOCALDOCOCCUS JANNASCHII, MJ1062
	Organism Common	:	METHANOCOCCUS JANNASCHII
	Organism Scientific	:	METHANOCALDOCOCCUS JANNASCHII
	Organism Taxid	:	2190
	Strain	:	DSM 2661

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 20)

No.	Name	Count	Type	Full Name
1	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
2	MES	8	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	8	Mod. Amino Acid	SELENOMETHIONINE
4	PG6	1	Ligand/Ion	1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE

Biological Unit 1 (4, 10)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	MES	4	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
4	PG6	1	Ligand/Ion	1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE

Biological Unit 2 (3, 10)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	MES	4	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
4	PG6	-1	Ligand/Ion	1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	MES A:8 , HOH A:176 , HOH A:179 , HOH A:184 , HOH A:207 , PHE A:377 , ILE A:433 , TRP A:441 , GLY A:442 , GLY A:446 , ASN A:473 , LEU A:479	BINDING SITE FOR RESIDUE MES A 2
02	AC2	SOFTWARE	MES A:2 , HOH A:89 , ARG A:369 , ASN A:420 , GLY A:432 , ILE A:433 , ARG A:468 , ASN A:473 , SER A:476	BINDING SITE FOR RESIDUE MES A 8
03	AC3	SOFTWARE	HOH A:187 , ASN A:399 , LEU A:424 , ASN A:425 , THR A:426 , ILE A:460 , TYR A:462 , GLN B:356 , TRP B:456	BINDING SITE FOR RESIDUE PG6 A 1
04	AC4	SOFTWARE	MES B:5 , HOH B:214 , ILE B:433 , TRP B:441 , GLY B:442 , GLY B:446 , ASN B:473 , SER B:476 , LEU B:479	BINDING SITE FOR RESIDUE MES B 1
05	AC5	SOFTWARE	MES B:1 , ARG B:369 , ASN B:420 , ILE B:431 , GLY B:432 , ILE B:433 , ARG B:468 , ASN B:473 , SER B:476	BINDING SITE FOR RESIDUE MES B 5
06	AC6	SOFTWARE	ILE B:460 , TYR B:462	BINDING SITE FOR RESIDUE EDO B 503
07	AC7	SOFTWARE	MES C:6 , HOH C:88 , HOH C:195 , HOH C:210 , ILE C:435 , TRP C:441 , GLY C:442 , GLY C:446 , ASN C:473 , SER C:476	BINDING SITE FOR RESIDUE MES C 4
08	AC8	SOFTWARE	MES C:4 , ARG C:369 , ASN C:420 , GLY C:432 , ILE C:433 , ARG C:468 , ASN C:473 , SER C:476	BINDING SITE FOR RESIDUE MES C 6
09	AC9	SOFTWARE	HIS C:390	BINDING SITE FOR RESIDUE EDO C 3
10	BC1	SOFTWARE	MES D:7 , HOH D:85 , HOH D:180 , ILE D:435 , TRP D:441 , GLY D:442 , GLY D:446 , ASN D:473 , SER D:476 , LEU D:479	BINDING SITE FOR RESIDUE MES D 3
11	BC2	SOFTWARE	MES D:3 , HOH D:182 , ARG D:369 , ASN D:420 , GLY D:432 , ILE D:433 , ARG D:468 , SER D:476	BINDING SITE FOR RESIDUE MES D 7
12	BC3	SOFTWARE	TRP C:368 , GLY C:436 , PHE C:438 , HOH D:13 , HOH D:21 , MSE D:366 , ALA D:367 , SER D:370	BINDING SITE FOR RESIDUE EDO D 2

(no "SS Bond" information available for 3EO4)

(no "Cis Peptide Bond" information available for 3EO4)

(no "SAP(SNP)/Variant" information available for 3EO4)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	Y1062_METJA	334-484	4	A:352-502 B:352-502 C:352-502 D:352-502

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	Y1062_METJA	334-484	2	A:352-502 B:352-502 - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	Y1062_METJA	334-484	2	- - C:352-502 D:352-502

(no "Exon" information available for 3EO4)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:158
 aligned with Y1062_METJA | Q58462 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:162
                                   332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482  
          Y1062_METJA   323 YNCKKIGEDSKIIIRQITDNDLELLMAWRSNPLIYKFFYIQKEPLKWEEHYSWWMSRENRVDWIILLRENNTIRKVGSVNVSQLNTDNPEIGILIGEFFLWGKHIGRHSVSLVLKWLKNIGYKKAHARILENNIRSIKLFESLGFKKTKKGRENEWIYEVNL 484
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3eo4A    00 A:341-502  [code=3.40.630.30, no name defined]                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee..----.eeeeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh...eeeeeeeee..eeeeeeeeeee.......eeeeee........hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------GNAT  PDB: A:352-502 UniProt: 334-484                                                                                                                   PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3eo4 A 341 ANCKK----SKIIIRQITDNDLELLmAWRSNPLIYKFFYIQKEPLKWEEHYSWWmSRENRVDWIILLRENNTIRKVGSVNVSQLNTDNPEIGILIGEFFLWGKHIGRHSVSLVLKWLKNIGYKKAHARILENNIRSIKLFESLGFKKTKKGRENEWIYEVNL 502
                                |  350       360     | 370       380       390    |  400       410       420       430       440       450       460       470       480       490       500  
                              345  350             366-MSE                      395-MSE

Chain B from PDB  Type:PROTEIN  Length:152
 aligned with Y1062_METJA | Q58462 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:152
                                   342       352       362       372       382       392       402       412       422       432       442       452       462       472       482  
          Y1062_METJA   333 KIIIRQITDNDLELLMAWRSNPLIYKFFYIQKEPLKWEEHYSWWMSRENRVDWIILLRENNTIRKVGSVNVSQLNTDNPEIGILIGEFFLWGKHIGRHSVSLVLKWLKNIGYKKAHARILENNIRSIKLFESLGFKKTKKGRENEWIYEVNL 484
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3eo4B00 B:351-502  [code=3.40.630.30, no name defined]                                                                                                   CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh....eeeeeeee....eeeeeeeeee.......eeeeee.hhhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GNAT  PDB: B:352-502 UniProt: 334-484                                                                                                                   PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3eo4 B 351 KIIIRQITDNDLELLmAWRSNPLIYKFFYIQKEPLKWEEHYSWWmSRENRVDWIILLRENNTIRKVGSVNVSQLNTDNPEIGILIGEFFLWGKHIGRHSVSLVLKWLKNIGYKKAHARILENNIRSIKLFESLGFKKTKKGRENEWIYEVNL 502
                                   360     | 370       380       390    |  400       410       420       430       440       450       460       470       480       490       500  
                                         366-MSE                      395-MSE

Chain C from PDB  Type:PROTEIN  Length:154
 aligned with Y1062_METJA | Q58462 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:154
                                   340       350       360       370       380       390       400       410       420       430       440       450       460       470       480    
          Y1062_METJA   331 DSKIIIRQITDNDLELLMAWRSNPLIYKFFYIQKEPLKWEEHYSWWMSRENRVDWIILLRENNTIRKVGSVNVSQLNTDNPEIGILIGEFFLWGKHIGRHSVSLVLKWLKNIGYKKAHARILENNIRSIKLFESLGFKKTKKGRENEWIYEVNL 484
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3eo4C00 C:349-502  [code=3.40.630.30, no name defined]                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh...eeeeeeeeee..eeeeeeeeeee.......eeeeee.hhhhh..hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhh..eeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---GNAT  PDB: C:352-502 UniProt: 334-484                                                                                                                   PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3eo4 C 349 DSKIIIRQITDNDLELLmAWRSNPLIYKFFYIQKEPLKWEEHYSWWmSRENRVDWIILLRENNTIRKVGSVNVSQLNTDNPEIGILIGEFFLWGKHIGRHSVSLVLKWLKNIGYKKAHARILENNIRSIKLFESLGFKKTKKGRENEWIYEVNL 502
                                   358       368       378       388      |398       408       418       428       438       448       458       468       478       488       498    
                                           366-MSE                      395-MSE

Chain D from PDB  Type:PROTEIN  Length:162
 aligned with Y1062_METJA | Q58462 from UniProtKB/Swiss-Prot  Length:484

    Alignment length:162
                                   332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482  
          Y1062_METJA   323 YNCKKIGEDSKIIIRQITDNDLELLMAWRSNPLIYKFFYIQKEPLKWEEHYSWWMSRENRVDWIILLRENNTIRKVGSVNVSQLNTDNPEIGILIGEFFLWGKHIGRHSVSLVLKWLKNIGYKKAHARILENNIRSIKLFESLGFKKTKKGRENEWIYEVNL 484
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3eo4D00 D:341-502  [code=3.40.630.30, no name defined]                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.....eeeeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhh..eeeeeeeeee..eeeeeeeeeee.......eeeeee.hhhhh..hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh...eeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------GNAT  PDB: D:352-502 UniProt: 334-484                                                                                                                   PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3eo4 D 341 ANCKKIGEDSKIIIRQITDNDLELLmAWRSNPLIYKFFYIQKEPLKWEEHYSWWmSRENRVDWIILLRENNTIRKVGSVNVSQLNTDNPEIGILIGEFFLWGKHIGRHSVSLVLKWLKNIGYKKAHARILENNIRSIKLFESLGFKKTKKGRENEWIYEVNL 502
                                   350       360     | 370       380       390    |  400       410       420       430       440       450       460       470       480       490       500  
                                                   366-MSE                      395-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3EO4)

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Aminopeptidase (284)

Homologous Superfamily: [code=3.40.630.30, no name defined] (126)

Methanococcus jannaschii (Methanocaldococcus jannaschii) (1)

1a	3eo4A00	A:341-502
1b	3eo4D00	D:341-502
1c	3eo4C00	C:349-502
1d	3eo4B00	B:351-502

(no "Pfam Domain" information available for 3EO4)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Y1062_METJA | Q58462)

molecular function
	GO:0008080	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
	GO:0016758	transferase activity, transferring hexosyl groups	Catalysis of the transfer of a hexosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0006474	N-terminal protein amino acid acetylation	The acetylation of the N-terminal amino acid of proteins.

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