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(-) Description

Title :  STRUCTURE OF HEPARINASE II COMPLEXED WITH HEPARAN SULFATE DEGRADATION DISACCHARIDE PRODUCT
 
Authors :  D. Shaya, M. Cygler
Date :  19 Aug 08  (Deposition) - 30 Dec 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Alpha And Beta Lyase Fold, Alpha6/Alpha6 Incomplete Toroid, Sugar Binding Protein, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Shaya, W. Zhao, M. L. Garron, Z. Xiao, Q. Cui, Z. Zhang, T. Sulea, R. J. Linhardt, M. Cygler
Catalytic Mechanism Of Heparinase Ii Investigated By Site-Directed Mutagenesis And The Crystal Structure With It Substrate.
J. Biol. Chem. V. 285 20051 2010
PubMed-ID: 20404324  |  Reference-DOI: 10.1074/JBC.M110.101071

(-) Compounds

Molecule 1 - HEPARINASE II PROTEIN
    Chains: A, B, C
    Fragment: UNP RESIDUES 24-772
    Organism Scientific: PEDOBACTER HEPARINUS
    Organism Taxid: 984

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 30)

Asymmetric Unit (8, 30)
No.NameCountTypeFull Name
1GCU3Ligand/IonD-GLUCURONIC ACID
2HS23Ligand/Ion2-DEOXY-4-O-(4-DEOXY-ALPHA-L-THREO-HEX-4-ENOPYRANURONOSYL)-2-{[(1R)-1-HYDROXYETHYL]AMINO}-ALPHA-D-GLUCOPYRANOSE
3MAN3Ligand/IonALPHA-D-MANNOSE
4PCA3Mod. Amino AcidPYROGLUTAMIC ACID
5PO49Ligand/IonPHOSPHATE ION
6RAM3Ligand/IonALPHA-L-RHAMNOSE
7XYS3Ligand/IonXYLOPYRANOSE
8ZN3Ligand/IonZINC ION
Biological Unit 1 (7, 10)
No.NameCountTypeFull Name
1GCU1Ligand/IonD-GLUCURONIC ACID
2HS21Ligand/Ion2-DEOXY-4-O-(4-DEOXY-ALPHA-L-THREO-HEX-4-ENOPYRANURONOSYL)-2-{[(1R)-1-HYDROXYETHYL]AMINO}-ALPHA-D-GLUCOPYRANOSE
3MAN1Ligand/IonALPHA-D-MANNOSE
4PCA1Mod. Amino AcidPYROGLUTAMIC ACID
5PO44Ligand/IonPHOSPHATE ION
6RAM1Ligand/IonALPHA-L-RHAMNOSE
7XYS1Ligand/IonXYLOPYRANOSE
8ZN-1Ligand/IonZINC ION
Biological Unit 2 (7, 9)
No.NameCountTypeFull Name
1GCU1Ligand/IonD-GLUCURONIC ACID
2HS21Ligand/Ion2-DEOXY-4-O-(4-DEOXY-ALPHA-L-THREO-HEX-4-ENOPYRANURONOSYL)-2-{[(1R)-1-HYDROXYETHYL]AMINO}-ALPHA-D-GLUCOPYRANOSE
3MAN1Ligand/IonALPHA-D-MANNOSE
4PCA1Mod. Amino AcidPYROGLUTAMIC ACID
5PO43Ligand/IonPHOSPHATE ION
6RAM1Ligand/IonALPHA-L-RHAMNOSE
7XYS1Ligand/IonXYLOPYRANOSE
8ZN-1Ligand/IonZINC ION
Biological Unit 3 (7, 8)
No.NameCountTypeFull Name
1GCU1Ligand/IonD-GLUCURONIC ACID
2HS21Ligand/Ion2-DEOXY-4-O-(4-DEOXY-ALPHA-L-THREO-HEX-4-ENOPYRANURONOSYL)-2-{[(1R)-1-HYDROXYETHYL]AMINO}-ALPHA-D-GLUCOPYRANOSE
3MAN1Ligand/IonALPHA-D-MANNOSE
4PCA1Mod. Amino AcidPYROGLUTAMIC ACID
5PO42Ligand/IonPHOSPHATE ION
6RAM1Ligand/IonALPHA-L-RHAMNOSE
7XYS1Ligand/IonXYLOPYRANOSE
8ZN-1Ligand/IonZINC ION

(-) Sites  (27, 27)

Asymmetric Unit (27, 27)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:408 , ASP A:425 , HIS A:451 , HOH A:778 , HOH A:779 , HOH A:983BINDING SITE FOR RESIDUE ZN A 1
02AC2SOFTWARELYS A:102 , LEU A:104 , THR A:105 , MAN A:774 , HOH A:899BINDING SITE FOR RESIDUE RAM A 773
03AC3SOFTWARETHR A:134 , RAM A:773 , GCU A:775BINDING SITE FOR RESIDUE MAN A 774
04AC4SOFTWARETHR A:134 , MAN A:774 , XYS A:776 , HOH A:890BINDING SITE FOR RESIDUE GCU A 775
05AC5SOFTWAREGCU A:775BINDING SITE FOR RESIDUE XYS A 776
06AC6SOFTWAREPO4 A:2 , ASP A:145 , ARG A:148 , GLY A:201 , HIS A:202 , GLU A:205 , TYR A:257 , ARG A:261 , ASN A:405 , HIS A:406 , TYR A:429 , TYR A:436 , ASN A:437 , GLY A:469 , GLY A:470 , HOH A:832 , HOH A:939 , HOH A:973BINDING SITE FOR RESIDUE HS2 A 777
07AC7SOFTWAREPHE A:95 , ARG A:96 , ASP A:145 , ARG A:148 , TYR A:257 , HS2 A:777 , HOH A:928BINDING SITE FOR RESIDUE PO4 A 2
08AC8SOFTWAREGLY A:435 , TYR A:436 , ASN A:437BINDING SITE FOR RESIDUE PO4 A 3
09AC9SOFTWAREHIS A:682 , GLU A:683 , ALA A:698BINDING SITE FOR RESIDUE PO4 A 5
10BC1SOFTWAREPRO A:611 , ASN A:615 , ASP A:665 , TYR A:666 , HOH A:859BINDING SITE FOR RESIDUE PO4 A 9
11BC2SOFTWAREHIS B:408 , ASP B:425 , HIS B:451 , HOH B:778 , HOH B:779 , HOH B:927BINDING SITE FOR RESIDUE ZN B 2
12BC3SOFTWARELYS B:102 , THR B:105 , MAN B:774 , HOH B:812BINDING SITE FOR RESIDUE RAM B 773
13BC4SOFTWARELEU B:104 , THR B:134 , RAM B:773 , GCU B:775BINDING SITE FOR RESIDUE MAN B 774
14BC5SOFTWARETHR B:134 , MAN B:774 , XYS B:776 , HOH B:827BINDING SITE FOR RESIDUE GCU B 775
15BC6SOFTWAREGCU B:775BINDING SITE FOR RESIDUE XYS B 776
16BC7SOFTWAREPO4 B:7 , ASP B:145 , ARG B:148 , GLY B:201 , HIS B:202 , GLU B:205 , TYR B:257 , ARG B:261 , ASN B:405 , HIS B:406 , TYR B:429 , TYR B:436 , ASN B:437 , GLY B:469 , GLY B:470 , HOH B:833 , HOH B:928BINDING SITE FOR RESIDUE HS2 B 777
17BC8SOFTWAREPRO B:611 , ASN B:615 , LYS B:660 , ASP B:665 , TYR B:666BINDING SITE FOR RESIDUE PO4 B 1
18BC9SOFTWAREPHE B:95 , ASP B:145 , ARG B:148 , TYR B:257 , HS2 B:777 , HOH B:787BINDING SITE FOR RESIDUE PO4 B 7
19CC1SOFTWAREGLY B:435 , TYR B:436 , ASN B:437 , SER B:471BINDING SITE FOR RESIDUE PO4 B 8
20CC2SOFTWAREHIS C:408 , ASP C:425 , HIS C:451 , HOH C:778 , HOH C:779BINDING SITE FOR RESIDUE ZN C 3
21CC3SOFTWARELYS C:102 , THR C:105 , MAN C:774BINDING SITE FOR RESIDUE RAM C 773
22CC4SOFTWARELEU C:104 , THR C:134 , RAM C:773 , GCU C:775 , HOH C:829BINDING SITE FOR RESIDUE MAN C 774
23CC5SOFTWARETHR C:134 , MAN C:774 , XYS C:776 , HOH C:829BINDING SITE FOR RESIDUE GCU C 775
24CC6SOFTWAREGCU C:775BINDING SITE FOR RESIDUE XYS C 776
25CC7SOFTWAREPO4 C:6 , ASP C:145 , ARG C:148 , GLY C:201 , HIS C:202 , GLU C:205 , TYR C:257 , ARG C:261 , ASN C:405 , HIS C:406 , TYR C:429 , TYR C:436 , ASN C:437 , GLY C:469 , GLY C:470 , HOH C:815 , HOH C:903 , HOH C:908 , HOH C:924BINDING SITE FOR RESIDUE HS2 C 777
26CC8SOFTWAREPRO C:611 , ASN C:615 , ASP C:665 , TYR C:666BINDING SITE FOR RESIDUE PO4 C 4
27CC9SOFTWAREPHE C:95 , ARG C:148 , TYR C:257 , HS2 C:777BINDING SITE FOR RESIDUE PO4 C 6

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3E80)

(-) Cis Peptide Bonds  (15, 15)

Asymmetric Unit
No.Residues
1His A:48 -Pro A:49
2Tyr A:191 -Pro A:192
3Ser A:376 -Pro A:377
4Gly A:515 -Pro A:516
5Leu A:610 -Pro A:611
6His B:48 -Pro B:49
7Tyr B:191 -Pro B:192
8Ser B:376 -Pro B:377
9Gly B:515 -Pro B:516
10Leu B:610 -Pro B:611
11His C:48 -Pro C:49
12Tyr C:191 -Pro C:192
13Ser C:376 -Pro C:377
14Gly C:515 -Pro C:516
15Leu C:610 -Pro C:611

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3E80)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3E80)

(-) Exons   (0, 0)

(no "Exon" information available for 3E80)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:747
 aligned with HEPB_PEDHD | C6XZB6 from UniProtKB/Swiss-Prot  Length:772

    Alignment length:747
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       
           HEPB_PEDHD    26 QTKADVVWKDVDGVSMPIPPKTHPRLYLREQQVPDLKNRMNDPKLKKVWADMIKMQEDWKPADIPEVKDFRFYFNQKGLTVRVELMALNYLMTKDPKVGREAITSIIDTLETATFKPAGDISRGIGLFMVTGAIVYDWCYDQLKPEEKTRFVKAFVRLAKMLECGYPPVKDKSIVGHASEWMIMRDLLSVGIAIYDEFPEMYNLAAGRFFKEHLVARNWFYPSHNYHQGMSYLNVRFTNDLFALWILDRMGAGNVFNPGQQFILYDAIYKRRPDGQILAGGDVDYSRKKPKYYTMPALLAGSYYKDEYLNYEFLKDPNVEPHCKLFEFLWRDTQLGSRKPDDLPLSRYSGSPFGWMIARTGWGPESVIAEMKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGSYTGSSGGYNSPHNKNFFKRTIAHNSLLIYDPKETFSSSGYGGSDHTDFAANDGGQRLPGKGWIAPRDLKEMLAGDFRTGKILAQGFGPDNQTPDYTYLKGDITAAYSAKVKEVKRSFLFLNLKDAKVPAAMIVFDKVVASNPDFKKFWLLHSIEQPEIKGNQITIKRTKNGDSGMLVNTALLPDAANSNITSIGGKGKDFWVFGTNYTNDPKPGTDEALERGEWRVEITPKKAAAEDYYLNVIQIADNTQQKLHEVKRIDGDKVVGVQLADRIVTFSKTSETVDRPFGFSVVGKGTFKFVMTDLLPGTWQVLKDGKILYPALSAKGDDGALYFEGTEGTYRFLR 772
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee..eeee...........hhhhh.hhhhhhhhhhhhhhhhhhhhh....hhhhh....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......................hhhhhhhhhhhh.hhhhhhhhhh....hhhhhhhhhhhh.......hhhhh..eeee.....eeeee.......eeeeee................eeeee..eee..............hhhhhhh..hhhhh..eeee.....................................hhhhhhh......eeeeeeee.......eeeeeee.hhhh...eeeeeeeeeeee.......eeeeeeeeeee.....eeeeeeee....eee..eeeee.......eeeeeeeee.hhh.eeeeeee......ee..ee.................eeeeeee.....eeeeeeeeeeee.........eeee...eeeeee..eeeeee.........eeeee.....eeeee.....eeeeeee..eeeeeeeee......eeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e80 A  26 xTKADVVWKDVDGVSMPIPPKTHPRLYLREQQVPDLKNRMNDPKLKKVWADMIKMQEDWKPADIPEVKDFRFYFNQKGLTVRVELMALNYLMTKDPKVGREAITSIIDTLETATFKPAGDISRGIGLFMVTGAIVYDWCYDQLKPEEKTRFVKAFVRLAKMLECGYPPVKDKSIVGHASEWMIMRDLLSVGIAIYDEFPEMYNLAAGRFFKEHLVARNWFYPSHNYHQGMSYLNVRFTNDLFALWILDRMGAGNVFNPGQQFILYDAIYKRRPDGQILAGGDVDYSRKKPKYYTMPALLAGSYYKDEYLNYEFLKDPNVEPHCKLFEFLWRDTQLGSRKPDDLPLSRYSGSPFGWMIARTGWGPESVIAEMKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGSYTGSSGGYNSPHNKNFFKRTIAHNSLLIYDPKETFSSSGYGGSDHTDFAANDGGQRLPGKGWIAPRDLKEMLAGDFRTGKILAQGFGPDNQTPDYTYLKGDITAAYSAKVKEVKRSFLFLNLKDAKVPAAMIVFDKVVASNPDFKKFWLLHSIEQPEIKGNQITIKRTKNGDSGMLVNTALLPDAANSNITSIGGKGKDFWVFGTNYTNDPKPGTDEALERGEWRVEITPKKAAAEDYYLNVIQIADNTQQKLHEVKRIDGDKVVGVQLADRIVTFSKTSETVDRPFGFSVVGKGTFKFVMTDLLPGTWQVLKDGKILYPALSAKGDDGALYFEGTEGTYRFLR 772
                            |       35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       
                            |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
                           26-PCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:747
 aligned with HEPB_PEDHD | C6XZB6 from UniProtKB/Swiss-Prot  Length:772

    Alignment length:747
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       
           HEPB_PEDHD    26 QTKADVVWKDVDGVSMPIPPKTHPRLYLREQQVPDLKNRMNDPKLKKVWADMIKMQEDWKPADIPEVKDFRFYFNQKGLTVRVELMALNYLMTKDPKVGREAITSIIDTLETATFKPAGDISRGIGLFMVTGAIVYDWCYDQLKPEEKTRFVKAFVRLAKMLECGYPPVKDKSIVGHASEWMIMRDLLSVGIAIYDEFPEMYNLAAGRFFKEHLVARNWFYPSHNYHQGMSYLNVRFTNDLFALWILDRMGAGNVFNPGQQFILYDAIYKRRPDGQILAGGDVDYSRKKPKYYTMPALLAGSYYKDEYLNYEFLKDPNVEPHCKLFEFLWRDTQLGSRKPDDLPLSRYSGSPFGWMIARTGWGPESVIAEMKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGSYTGSSGGYNSPHNKNFFKRTIAHNSLLIYDPKETFSSSGYGGSDHTDFAANDGGQRLPGKGWIAPRDLKEMLAGDFRTGKILAQGFGPDNQTPDYTYLKGDITAAYSAKVKEVKRSFLFLNLKDAKVPAAMIVFDKVVASNPDFKKFWLLHSIEQPEIKGNQITIKRTKNGDSGMLVNTALLPDAANSNITSIGGKGKDFWVFGTNYTNDPKPGTDEALERGEWRVEITPKKAAAEDYYLNVIQIADNTQQKLHEVKRIDGDKVVGVQLADRIVTFSKTSETVDRPFGFSVVGKGTFKFVMTDLLPGTWQVLKDGKILYPALSAKGDDGALYFEGTEGTYRFLR 772
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee..eeee...........hhhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhh....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.......hhhhh..eeee.....eeeee........eeeee................eeee...eee..............hhhhhhh..hhhhh..eeee.....ee...........ee.................hhhhhhhh.....eeeeeeee.......eeeeeee.hhhh...eeeeeeeeeeee.......eeeeeeeeeee.....eeeeeeee....eee..eeeee.......eeeeeeeee.hhh.eeeeeee......ee..ee.................eeeeeee.....eeeeeeeeeeee........eeeee...eeeeee..eeeeee.........eeeee.....eeeee.....eeeeeee..eeeeeeeee......eeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e80 B  26 xTKADVVWKDVDGVSMPIPPKTHPRLYLREQQVPDLKNRMNDPKLKKVWADMIKMQEDWKPADIPEVKDFRFYFNQKGLTVRVELMALNYLMTKDPKVGREAITSIIDTLETATFKPAGDISRGIGLFMVTGAIVYDWCYDQLKPEEKTRFVKAFVRLAKMLECGYPPVKDKSIVGHASEWMIMRDLLSVGIAIYDEFPEMYNLAAGRFFKEHLVARNWFYPSHNYHQGMSYLNVRFTNDLFALWILDRMGAGNVFNPGQQFILYDAIYKRRPDGQILAGGDVDYSRKKPKYYTMPALLAGSYYKDEYLNYEFLKDPNVEPHCKLFEFLWRDTQLGSRKPDDLPLSRYSGSPFGWMIARTGWGPESVIAEMKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGSYTGSSGGYNSPHNKNFFKRTIAHNSLLIYDPKETFSSSGYGGSDHTDFAANDGGQRLPGKGWIAPRDLKEMLAGDFRTGKILAQGFGPDNQTPDYTYLKGDITAAYSAKVKEVKRSFLFLNLKDAKVPAAMIVFDKVVASNPDFKKFWLLHSIEQPEIKGNQITIKRTKNGDSGMLVNTALLPDAANSNITSIGGKGKDFWVFGTNYTNDPKPGTDEALERGEWRVEITPKKAAAEDYYLNVIQIADNTQQKLHEVKRIDGDKVVGVQLADRIVTFSKTSETVDRPFGFSVVGKGTFKFVMTDLLPGTWQVLKDGKILYPALSAKGDDGALYFEGTEGTYRFLR 772
                            |       35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       
                           26-PCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:747
 aligned with HEPB_PEDHD | C6XZB6 from UniProtKB/Swiss-Prot  Length:772

    Alignment length:747
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       
           HEPB_PEDHD    26 QTKADVVWKDVDGVSMPIPPKTHPRLYLREQQVPDLKNRMNDPKLKKVWADMIKMQEDWKPADIPEVKDFRFYFNQKGLTVRVELMALNYLMTKDPKVGREAITSIIDTLETATFKPAGDISRGIGLFMVTGAIVYDWCYDQLKPEEKTRFVKAFVRLAKMLECGYPPVKDKSIVGHASEWMIMRDLLSVGIAIYDEFPEMYNLAAGRFFKEHLVARNWFYPSHNYHQGMSYLNVRFTNDLFALWILDRMGAGNVFNPGQQFILYDAIYKRRPDGQILAGGDVDYSRKKPKYYTMPALLAGSYYKDEYLNYEFLKDPNVEPHCKLFEFLWRDTQLGSRKPDDLPLSRYSGSPFGWMIARTGWGPESVIAEMKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGSYTGSSGGYNSPHNKNFFKRTIAHNSLLIYDPKETFSSSGYGGSDHTDFAANDGGQRLPGKGWIAPRDLKEMLAGDFRTGKILAQGFGPDNQTPDYTYLKGDITAAYSAKVKEVKRSFLFLNLKDAKVPAAMIVFDKVVASNPDFKKFWLLHSIEQPEIKGNQITIKRTKNGDSGMLVNTALLPDAANSNITSIGGKGKDFWVFGTNYTNDPKPGTDEALERGEWRVEITPKKAAAEDYYLNVIQIADNTQQKLHEVKRIDGDKVVGVQLADRIVTFSKTSETVDRPFGFSVVGKGTFKFVMTDLLPGTWQVLKDGKILYPALSAKGDDGALYFEGTEGTYRFLR 772
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee..eeee...........hhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh......................hhhhhhhhhhhh.hhhhhhhhhh....hhhhhhhhhhhh.......hhhhh..eeee.....eeeee.......eeeeee................eeeee..eee..............hhhhhhh..hhhhh..eee......................................hhhhhhhh.....eeeeeeee.......eeeeeee.hhhh...eeeeeeeeeee........eeeeeeeeeee......eeeeeee....eee..eeeee.......eeeeeeeee.hhh.eeeeeee......ee..ee.................eeeeeee.....eeeeeeeeeeee.........eeee...eeeeee..eeeeee.........eeeee.....eeeee.....eeeeeee..eeeeeeeee......eeeee..eeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e80 C  26 xTKADVVWKDVDGVSMPIPPKTHPRLYLREQQVPDLKNRMNDPKLKKVWADMIKMQEDWKPADIPEVKDFRFYFNQKGLTVRVELMALNYLMTKDPKVGREAITSIIDTLETATFKPAGDISRGIGLFMVTGAIVYDWCYDQLKPEEKTRFVKAFVRLAKMLECGYPPVKDKSIVGHASEWMIMRDLLSVGIAIYDEFPEMYNLAAGRFFKEHLVARNWFYPSHNYHQGMSYLNVRFTNDLFALWILDRMGAGNVFNPGQQFILYDAIYKRRPDGQILAGGDVDYSRKKPKYYTMPALLAGSYYKDEYLNYEFLKDPNVEPHCKLFEFLWRDTQLGSRKPDDLPLSRYSGSPFGWMIARTGWGPESVIAEMKVNEYSFLNHQHQDAGAFQIYYKGPLAIDAGSYTGSSGGYNSPHNKNFFKRTIAHNSLLIYDPKETFSSSGYGGSDHTDFAANDGGQRLPGKGWIAPRDLKEMLAGDFRTGKILAQGFGPDNQTPDYTYLKGDITAAYSAKVKEVKRSFLFLNLKDAKVPAAMIVFDKVVASNPDFKKFWLLHSIEQPEIKGNQITIKRTKNGDSGMLVNTALLPDAANSNITSIGGKGKDFWVFGTNYTNDPKPGTDEALERGEWRVEITPKKAAAEDYYLNVIQIADNTQQKLHEVKRIDGDKVVGVQLADRIVTFSKTSETVDRPFGFSVVGKGTFKFVMTDLLPGTWQVLKDGKILYPALSAKGDDGALYFEGTEGTYRFLR 772
                            |       35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       
                           26-PCA
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3E80)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3E80)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3E80)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (HEPB_PEDHD | C6XZB6)
molecular function
    GO:0008201    heparin binding    Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
    GO:0047488    heparin lyase activity    Catalysis of the eliminative cleavage of polysaccharides containing 1,4-linked D-glucuronate or L-iduronate residues and 1,4-alpha-linked 2-sulfoamino-2-deoxy-6-sulfo-D-glucose residues to give oligosaccharides with terminal 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their nonreducing ends.
    GO:0015021    heparin-sulfate lyase activity    Catalysis of the elimination of sulfate; appears to act on linkages between N-acetyl-D-glucosamine and uronate. Product is an unsaturated sugar.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0030211    heparin catabolic process    The chemical reactions and pathways resulting in the breakdown of heparin, any member of a group of glycosaminoglycans of average Mr (6000-20000), consisting predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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  3e80
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  HEPB_PEDHD | C6XZB6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HEPB_PEDHD | C6XZB6: 2fuq 2fut 3e7j

(-) Related Entries Specified in the PDB File

3e7j 'HEPARINASEII H202A/Y257A DOUBLE MUTANT