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(-) Description

Title :  STRUCTURE DETERMINATION OF THE CANCER-ASSOCIATED MYCOPLASMA HYORHINIS PROTEIN MH-P37
 
Authors :  K. H. Sippel, A. H. Robbins, R. Reutzel, J. Domsic, R. Mckenna
Date :  18 Aug 08  (Deposition) - 21 Oct 08  (Release) - 09 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Mycoplasma, P37, Tpp, Cell Membrane, Lipoprotein, Membrane, Palmitate, Transport, Tpp Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. H. Sippel, A. H. Robbins, R. Reutzel, J. Domsic, S. K. Boehlein, L. Govindasamy, M. Agbandje-Mckenna, C. J. Rosser, R. Mckenna
Structure Determination Of The Cancer-Associated Mycoplasma Hyorhinis Protein Mh-P37.
Acta Crystallogr. , Sect. D V. 64 1172 2008
PubMed-ID: 19020356  |  Reference-DOI: 10.1107/S0907444908030175
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HIGH AFFINITY TRANSPORT SYSTEM PROTEIN P37
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET31P37
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PET31F1M1
    Gene: P37
    Organism Scientific: MYCOPLASMA HYORHINIS
    Organism Taxid: 2100

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2CL1Ligand/IonCHLORIDE ION
3I3C2Ligand/Ion5-AMINO-2,4,6-TRIIODOBENZENE-1,3-DICARBOXYLIC ACID
4TPP1Ligand/IonTHIAMINE DIPHOSPHATE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:165 , ASP A:167 , VAL A:172 , LYS A:176 , LYS A:232 , ASN A:236 , ALA A:334 , LEU A:335 , HOH A:1108BINDING SITE FOR RESIDUE I3C A 500
2AC2SOFTWARELYS A:44 , ASP A:97 , LYS A:99 , LYS A:238 , ASP A:239 , TRP A:240 , ASN A:241 , LYS A:273BINDING SITE FOR RESIDUE I3C A 501
3AC3SOFTWARELYS A:129 , ASN A:200 , VAL A:201 , TYR A:215 , SER A:255 , SER A:256 , SER A:257 , LYS A:258 , TRP A:314 , TYR A:343 , ASP A:344 , LEU A:378 , LEU A:379 , GLY A:380 , HOH A:1026 , HOH A:1028 , HOH A:1050 , HOH A:1067 , HOH A:1090 , HOH A:1169BINDING SITE FOR RESIDUE TPP A 551
4AC4SOFTWAREASP A:43 , SER A:45 , PRO A:118 , ASP A:121 , HOH A:1010 , HOH A:1093BINDING SITE FOR RESIDUE CA A 601
5AC5SOFTWAREASN A:87BINDING SITE FOR RESIDUE CL A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3E79)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3E79)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3E79)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3E79)

(-) Exons   (0, 0)

(no "Exon" information available for 3E79)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:365
 aligned with P37_MYCHR | P15363 from UniProtKB/Swiss-Prot  Length:403

    Alignment length:365
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398     
            P37_MYCHR    39 QGQWDKSITFGVSEAWLNKKKGGEKVNKEVINTFLENFKKEFNKLKNANDKTKNFDDVDFKVTPIQDFTVLLNNLSTDNPELDFGINASGKLVEFLKNNPGIITPALETTTNSFVFDKEKDKFYVDGTDSDPLVKIAKEINKIFVETPYASWTDENHKWNGNVYQSVYDPTVQANFYRGMIWIKGNDETLAKIKKAWNDKDWNTFRNFGILHGKDNSFSKFKLEETILKNHFQNKFTTLNEDRSAHPNAYKQKSADTLGTLDDFHIAFSEEGSFAWTHNKSATKPFETKANEKMEALIVTNPIPYDVGVFRKSVNQLEQNLIVQTFINLAKNKQDTYGPLLGYNGYKKIDNFQKEIVEVYEKAIK 403
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh.........eeeeeee.hhhhhhhhhhh......eeeehhhhhhhhhhhh....eeeeeeeeeee................hhhhhhhhhhhhhhh..hhhhh...........hhh.eeeeeee....eeeeeeehhhhhhhhhhhhhh.hhhhhhhh.eee........hhhhhhhhhhhh.....hhhhhhhhh...eee.hhhhhhhh....eeeee.hhhhhh...............eeeeeee.......eeee....hhhhhhhhhhhhhhhhhh....hhhhh...eeee..hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e79 A  39 QGQWDKSITFGVSEAWLNKKKGGEKVNKEVINTFLENFKKEFNKLKNANDKTKNFDDVDFKVTPIQDFTVLLNNLSTDNPELDFGINASGKLVEFLKNNPGIITPALETTTNSFVFDKEKDKFYVDGTDSDPLVKIAKEINKIFVETPYASWTDENHKWNGNVYQSVYDPTVQANFYRGMIWIKGNDETLAKIKKAWNDKDWNTFRNFGILHGKDNSSSKFKLEETILKNHFQNKFTTLNEDRSAHPNAYKQKSADTLGTLDDFHIAFSEEGSFAWTHNKSATKPFETKANEKMEALIVTNPIPYDVGVFRKSVNQLEQNLIVQTFINLAKNKQDTYGPLLGYNGYKKIDNFQKEIVEVYEKAIK 403
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3E79)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3E79)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3E79)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (P37_MYCHR | P15363)
molecular function
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  3e79
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  P37_MYCHR | P15363
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        P37_MYCHR | P15363: 3e78 3eki

(-) Related Entries Specified in the PDB File

3e78