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(-) Description

Title :  CRYSTAL STRUCTURE OF A PREDICTED ZINCIN-LIKE METALLOPROTEASE (ACEL_2062) FROM ACIDOTHERMUS CELLULOLYTICUS 11B AT 1.80 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  01 Aug 08  (Deposition) - 19 Aug 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Duf1025 Family Protein, Zincin-Like Fold, Conserved Matrix Metalloprotease Motif, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Predicted Zincin-Like Metalloprotease (Yp_873820. 1) From Acidothermus Cellulolyticus 11B At 1. 80 Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PREDICTED ZINCIN-LIKE METALLOPROTEASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_873820.1, ACEL_2062
    Organism Scientific: ACIDOTHERMUS CELLULOLYTICUS 11B
    Organism Taxid: 351607
    Other Details: SYNTHETIC GENE: THE GENE PRODUCT WAS BASED ON YP_873820.1 (PREDICTED ZINCIN-LIKE METALLOPROTEASE) FROM ACIDOTHERMUS CELLULOLYTICUS (STRAIN ATCC43068/11B)

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CA2Ligand/IonCALCIUM ION
3MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:38 , ASP B:18 , HOH B:149 , HOH B:161 , HOH B:178BINDING SITE FOR RESIDUE CA B 114
2AC2SOFTWAREGLU A:15 , HOH A:198 , HOH A:203 , GLU B:38BINDING SITE FOR RESIDUE CA B 115
3AC3SOFTWAREARG A:72 , ASN A:73 , CYS A:76 , HOH A:205 , ASP B:18BINDING SITE FOR RESIDUE ACT A 114
4AC4SOFTWAREASP A:18 , TYR B:3 , ASN B:73 , CYS B:76 , HOH B:147 , HOH B:211BINDING SITE FOR RESIDUE ACT B 116

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3E11)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3E11)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
 aligned with A0LWM4_ACIC1 | A0LWM4 from UniProtKB/TrEMBL  Length:113

    Alignment length:114
                             1                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109    
         A0LWM4_ACIC1     - -MVYVDPDRFDELVAEALDGIPEEFARAMRNVAVFVEDEPDDPELLGLYVGIPLTERTTAYGGVLPDRIIIYRNTICALCETESEVIDEVRKTVVHEIAHHFGIDDERLHELGY 113
               SCOP domains -d3e11a1 A:1-113 Uncharacterized protein Acel_2062                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.........eeee..hhhhh.........eeeeeehhhhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 3e11 A   0 GmVYVDPDRFDELVAEALDGIPEEFARAmRNVAVFVEDEPDDPELLGLYVGIPLTERTTAYGGVLPDRIIIYRNTICALCETESEVIDEVRKTVVHEIAHHFGIDDERLHELGY 113
                             |       9        19        29        39        49        59        69        79        89        99       109    
                             |                         28-MSE                                                                                 
                             1-MSE                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:114
 aligned with A0LWM4_ACIC1 | A0LWM4 from UniProtKB/TrEMBL  Length:113

    Alignment length:114
                             1                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109    
         A0LWM4_ACIC1     - -MVYVDPDRFDELVAEALDGIPEEFARAMRNVAVFVEDEPDDPELLGLYVGIPLTERTTAYGGVLPDRIIIYRNTICALCETESEVIDEVRKTVVHEIAHHFGIDDERLHELGY 113
               SCOP domains d3e11b_ B: Uncharacterized protein Acel_2062                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhhhhh.hhhhh.....eeeeee.........eeee..hhhhhh........eeeeeehhhhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 3e11 B   0 GmVYVDPDRFDELVAEALDGIPEEFARAmRNVAVFVEDEPDDPELLGLYVGIPLTERTTAYGGVLPDRIIIYRNTICALCETESEVIDEVRKTVVHEIAHHFGIDDERLHELGY 113
                             |       9        19        29        39        49        59        69        79        89        99       109    
                             1-MSE                     28-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3E11)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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