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(-) Description

Title :  CRYSTAL STRUCTURE OF PYRUVATE KINASE FROM LEISHMANIA MEXICANA IN COMPLEX WITH SULPHATE IONS
 
Authors :  L. B. Tulloch, L. A. Gillmore, M. D. Walkinshaw
Date :  01 Aug 08  (Deposition) - 19 Aug 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F  (2x)
Keywords :  Pyruvate, Kinase, Nad+ Nadh, Adp, Phosphoenolpyruvate, Pep, Glycolysis, Trypanosomatid, Leishmania, Mexicana, Allosteric Enzyme, Magnesium, Metal-Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. B. Tulloch, H. P. Morgan, V. Hannaert, P. A. Michels, L. A. Fothergill-Gilmore, M. D. Walkinshaw
Sulphate Removal Induces A Major Conformational Change In Leishmania Mexicana Pyruvate Kinase In The Crystalline State.
J. Mol. Biol. V. 383 615 2008
PubMed-ID: 18775437  |  Reference-DOI: 10.1016/J.JMB.2008.08.037

(-) Compounds

Molecule 1 - PYRUVATE KINASE
    ChainsA, B, C, D, E, F
    EC Number2.7.1.40
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET28
    Expression System Vector TypePLASMID
    GenePYK
    MutationYES
    Organism ScientificLEISHMANIA MEXICANA
    Organism Taxid5665
    SynonymPK

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)ABCD  
Biological Unit 2 (2x)    EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 43)

Asymmetric Unit (2, 43)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO440Ligand/IonSULFATE ION
Biological Unit 1 (2, 30)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO428Ligand/IonSULFATE ION
Biological Unit 2 (2, 26)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO424Ligand/IonSULFATE ION

(-) Sites  (43, 43)

Asymmetric Unit (43, 43)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:49 , ASN A:51 , LYS A:238BINDING SITE FOR RESIDUE SO4 A 501
02AC2SOFTWAREGLN A:297 , GLU A:300 , SER A:330 , GLY A:331 , GLU A:332BINDING SITE FOR RESIDUE SO4 A 502
03AC3SOFTWAREHIS A:54 , ARG A:174BINDING SITE FOR RESIDUE SO4 A 503
04AC4SOFTWAREHIS A:54 , ARG A:90 , ARG A:175BINDING SITE FOR RESIDUE SO4 A 506
05AC5SOFTWARESER A:400 , ASN A:401 , THR A:402 , GLY A:403 , ARG A:404 , SER A:405 , ALA A:481 , ASP A:482BINDING SITE FOR RESIDUE SO4 A 507
06AC6SOFTWARELYS A:453 , ARG A:456BINDING SITE FOR RESIDUE SO4 A 508
07AC7SOFTWARESER A:1 , GLN A:2 , GLN B:2 , HOH B:1113BINDING SITE FOR RESIDUE SO4 B 504
08AC8SOFTWAREARG B:49 , ASN B:51 , SER B:53 , LYS B:238BINDING SITE FOR RESIDUE SO4 B 501
09AC9SOFTWAREGLN B:297 , GLU B:300 , GLY B:331 , GLU B:332BINDING SITE FOR RESIDUE SO4 B 502
10BC1SOFTWARESER B:53 , HIS B:54 , ARG B:174 , HOH B:1100BINDING SITE FOR RESIDUE SO4 B 503
11BC2SOFTWAREASN B:178 , LEU B:179 , PRO B:180 , VAL B:184 , GLU B:268BINDING SITE FOR RESIDUE SO4 B 505
12BC3SOFTWAREHIS B:54 , ARG B:90 , ARG B:175 , LYS B:335BINDING SITE FOR RESIDUE SO4 B 506
13BC4SOFTWARESER B:400 , ASN B:401 , THR B:402 , GLY B:403 , ARG B:404 , SER B:405 , ALA B:481 , ASP B:482BINDING SITE FOR RESIDUE SO4 B 507
14BC5SOFTWAREARG B:456BINDING SITE FOR RESIDUE SO4 B 508
15BC6SOFTWAREARG C:49 , ASN C:51 , LYS C:238BINDING SITE FOR RESIDUE SO4 C 501
16BC7SOFTWAREGLN C:297 , GLU C:300 , GLY C:331 , GLU C:332BINDING SITE FOR RESIDUE SO4 C 502
17BC8SOFTWARESER C:53 , HIS C:54 , GLY C:55 , ARG C:174BINDING SITE FOR RESIDUE SO4 C 503
18BC9SOFTWAREASN C:178 , LEU C:179 , VAL C:184 , ARG C:214 , GLN C:243 , GLU C:268BINDING SITE FOR RESIDUE SO4 C 505
19CC1SOFTWAREHIS C:54 , ARG C:90 , ARG C:175BINDING SITE FOR RESIDUE SO4 C 506
20CC2SOFTWARESER C:400 , ASN C:401 , THR C:402 , GLY C:403 , ARG C:404 , SER C:405 , ALA C:481 , ASP C:482BINDING SITE FOR RESIDUE SO4 C 507
21CC3SOFTWAREASN C:401 , ARG C:456BINDING SITE FOR RESIDUE SO4 C 508
22CC4SOFTWAREGLN C:2 , GLN D:2 , HOH D:2149BINDING SITE FOR RESIDUE SO4 D 504
23CC5SOFTWAREARG D:49 , ASN D:51 , SER D:53 , LYS D:238BINDING SITE FOR RESIDUE SO4 D 501
24CC6SOFTWAREGLN D:297 , GLU D:300 , SER D:330 , GLY D:331 , GLU D:332BINDING SITE FOR RESIDUE SO4 D 502
25CC7SOFTWAREHIS D:54 , GLY D:55 , HOH D:2132BINDING SITE FOR RESIDUE SO4 D 503
26CC8SOFTWAREASN D:178 , ASN D:241 , GLN D:243 , GLU D:268BINDING SITE FOR RESIDUE SO4 D 505
27CC9SOFTWAREHIS D:54 , ARG D:90 , ARG D:175 , LYS D:335BINDING SITE FOR RESIDUE SO4 D 506
28DC1SOFTWARESER D:400 , ASN D:401 , THR D:402 , GLY D:403 , ARG D:404 , SER D:405 , ALA D:481 , ASP D:482BINDING SITE FOR RESIDUE SO4 D 507
29DC2SOFTWAREARG E:49 , ASN E:51 , LYS E:238BINDING SITE FOR RESIDUE SO4 E 501
30DC3SOFTWAREGLN E:297 , SER E:330 , GLY E:331 , GLU E:332BINDING SITE FOR RESIDUE SO4 E 502
31DC4SOFTWARESER E:53 , HIS E:54 , ARG E:174BINDING SITE FOR RESIDUE SO4 E 503
32DC5SOFTWAREGLN E:2 , HOH E:3040 , HOH E:4135 , GLN F:2BINDING SITE FOR RESIDUE SO4 E 504
33DC6SOFTWAREHIS E:54 , ARG E:90 , ARG E:175BINDING SITE FOR RESIDUE SO4 E 506
34DC7SOFTWARESER E:400 , ASN E:401 , THR E:402 , GLY E:403 , ARG E:404 , SER E:405 , ALA E:481 , ASP E:482BINDING SITE FOR RESIDUE SO4 E 507
35DC8SOFTWAREARG F:49 , ASN F:51 , ASP F:83 , LYS F:238 , SO4 F:506BINDING SITE FOR RESIDUE SO4 F 501
36DC9SOFTWAREGLN F:297 , GLU F:300 , GLY F:331 , GLU F:332BINDING SITE FOR RESIDUE SO4 F 502
37EC1SOFTWARESER F:53 , HIS F:54 , ARG F:174BINDING SITE FOR RESIDUE SO4 F 503
38EC2SOFTWAREHIS F:54 , ARG F:90 , ARG F:175 , SO4 F:501BINDING SITE FOR RESIDUE SO4 F 506
39EC3SOFTWARESER F:400 , ASN F:401 , THR F:402 , GLY F:403 , ARG F:404 , SER F:405 , ALA F:481 , ASP F:482BINDING SITE FOR RESIDUE SO4 F 507
40EC4SOFTWARELYS F:453 , ARG F:456BINDING SITE FOR RESIDUE SO4 F 508
41EC5SOFTWARESER A:56 , LYS D:123 , GLU D:156BINDING SITE FOR RESIDUE GOL A 509
42EC6SOFTWAREASN A:178 , LEU A:179 , CYS A:182 , VAL A:184 , ARG A:214 , GLN A:243 , GLU A:268BINDING SITE FOR RESIDUE GOL A 510
43EC7SOFTWAREPHE A:115 , LYS A:123 , GLY E:55 , SER E:56 , HOH E:3046 , HOH E:4110BINDING SITE FOR RESIDUE GOL E 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3E0V)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Ile A:372 -Pro A:373
2Ile B:372 -Pro B:373
3Ile C:372 -Pro C:373
4Ile D:372 -Pro D:373
5Ile E:372 -Pro E:373
6Ile F:372 -Pro F:373

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3E0V)

(-) PROSITE Motifs  (1, 6)

Asymmetric Unit (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PYRUVATE_KINASEPS00110 Pyruvate kinase active site signature.KPYK_LEIME234-246
 
 
 
 
 
  6A:233-245
B:233-245
C:233-245
D:233-245
E:233-245
F:233-245
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PYRUVATE_KINASEPS00110 Pyruvate kinase active site signature.KPYK_LEIME234-246
 
 
 
 
 
  4A:233-245
B:233-245
C:233-245
D:233-245
-
-
Biological Unit 2 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PYRUVATE_KINASEPS00110 Pyruvate kinase active site signature.KPYK_LEIME234-246
 
 
 
 
 
  4-
-
-
-
E:233-245
F:233-245

(-) Exons   (0, 0)

(no "Exon" information available for 3E0V)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:494
 aligned with KPYK_LEIME | Q27686 from UniProtKB/Swiss-Prot  Length:499

    Alignment length:500
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499
           KPYK_LEIME     - -MSQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHADHKVKGYANQTRILLVE 499
               SCOP domains --d3e0va2 A:1-87,A:187-357 Pyruvate kinase, N-terminal domain                            d3e0va1 A:88-186 Pyruvate kinase (PK)                                                              d3e0va2 A:1-87,A:187-357 Pyruvate kinase, N-terminal domain                                                                                                                d3e0va3 A:358-498 Pyruvate kinase, C-terminal domain                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh............eeeee......hhhhhhhhhhhheeeeeee....hhhhhhhhhhhhhhhhhhh....eeeee......................eeeee.hhhhh......eee...hhhhhh.....eeee....eeeeeeeeee..eeeeee...........ee...........hhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....hhhhhh....hhhhhhhhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhh......eeeee.hhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhh.......eeeeee..------..eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PYRUVATE_KINA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e0v A  -1 HMSQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDADKLGHDWGKEHRVAAGVEFAKSKGYVQTGDYCVVIHAD------ANQTRILLVE 498
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478   |     -|      498
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             482    489         

Chain B from PDB  Type:PROTEIN  Length:497
 aligned with KPYK_LEIME | Q27686 from UniProtKB/Swiss-Prot  Length:499

    Alignment length:501
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498 
           KPYK_LEIME     - --MSQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHADHKVKGYANQTRILLVE 499
               SCOP domains ---d3e0vb2 B:1-87,B:187-357 Pyruvate kinase, N-terminal domain                            d3e0vb1 B:88-186 Pyruvate kinase (PK)                                                              d3e0vb2 B:1-87,B:187-357 Pyruvate kinase, N-terminal domain                                                                                                                d3e0vb3 B:358-498 Pyruvate kinase, C-terminal domain                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh..............eeeee......hhhhhhhhhhhheeeeeee....hhhhhhhhhhhhhhhhhhhh...eeeee......................eeeee.hhhhh......eee..............eeee....eeeeeeeeee..eeeeee...........ee...........hhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhh...eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....hhhhhh....hhhhhhhhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhh......eeeee.hhhhhhhh.....eeeee...........hhhhhhhhhhhhhhh.......eeeeee..----....eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PYRUVATE_KINA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e0v B  -2 SHMSQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDADKLGHDWGKEHRVAAGVEFAKSKGYVQTGDYCVVIHAD----GYANQTRILLVE 498
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477    |  487       497 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              482  487           

Chain C from PDB  Type:PROTEIN  Length:494
 aligned with KPYK_LEIME | Q27686 from UniProtKB/Swiss-Prot  Length:499

    Alignment length:500
                             1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499
           KPYK_LEIME     - -MSQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHADHKVKGYANQTRILLVE 499
               SCOP domains --d3e0vc2 C:1-87,C:187-357 Pyruvate kinase, N-terminal domain                            d3e0vc1 C:88-186 Pyruvate kinase (PK)                                                              d3e0vc2 C:1-87,C:187-357 Pyruvate kinase, N-terminal domain                                                                                                                d3e0vc3 C:358-498 Pyruvate kinase, C-terminal domain                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh..............eeeee.hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhh....eeeee......................eeeee.hhhhh......eee....hhhhhh....eeee....eeeeeeeeee..eeeeee...........ee...........hhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh...eeeehhhhhh...hhhhhhhhhhhhhhhhhhhh..eee....hhhhhh....hhhhhhhhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhh.....eeeee.hhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhh.......eeeeee..------..eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PYRUVATE_KINA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e0v C  -1 HMSQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDADKLGHDWGKEHRVAAGVEFAKSKGYVQTGDYCVVIHAD------ANQTRILLVE 498
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478   |     -|      498
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             482    489         

Chain D from PDB  Type:PROTEIN  Length:495
 aligned with KPYK_LEIME | Q27686 from UniProtKB/Swiss-Prot  Length:499

    Alignment length:501
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498 
           KPYK_LEIME     - --MSQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHADHKVKGYANQTRILLVE 499
               SCOP domains ---d3e0vd2 D:1-87,D:187-357 Pyruvate kinase, N-terminal domain                            d3e0vd1 D:88-186 Pyruvate kinase (PK)                                                              d3e0vd2 D:1-87,D:187-357 Pyruvate kinase, N-terminal domain                                                                                                                d3e0vd3 D:358-498 Pyruvate kinase, C-terminal domain                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh............eeeee......hhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhh...eeeee......................eeeee.hhhhh......eee..hhhhhhhh....eeee....eeeeeeeeee..eeeeee...........ee...........hhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....hhhhhh....hhhhhhhhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhh......eeeee.hhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhh......eeeeee..------..eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PYRUVATE_KINA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e0v D  -2 SHMSQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDADKLGHDWGKEHRVAAGVEFAKSKGYVQTGDYCVVIHAD------ANQTRILLVE 498
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477    |    - |     497 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              482    489         

Chain E from PDB  Type:PROTEIN  Length:495
 aligned with KPYK_LEIME | Q27686 from UniProtKB/Swiss-Prot  Length:499

    Alignment length:501
                              1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498 
           KPYK_LEIME     - --MSQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHADHKVKGYANQTRILLVE 499
               SCOP domains ---d3e0ve2 E:1-87,E:187-357 Pyruvate kinase, N-terminal domain                            d3e0ve1 E:88-186 Pyruvate kinase (PK)                                                              d3e0ve2 E:1-87,E:187-357 Pyruvate kinase, N-terminal domain                                                                                                                d3e0ve3 E:358-498 Pyruvate kinase, C-terminal domain                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh..............eeeee.hhhhhhhhhhhhhhhhheeeeeee....hhhhhhhhhhhhhhhhhhh....eeeee......................eeeee.hhhhh......eee..............eeee....eeeeeeeeee..eeeeee...........ee...........hhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhh...eeeehhhhhh...hhhhhhhhhhhhhhhhhhhh..eee....hhhhhh....hhhhhhhhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhh.....eeeee.hhhhhhhh.....eeeee...........hhhhhhhhhhhhhhh.......eeeeee..------..eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PYRUVATE_KINA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e0v E  -2 SHMSQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDADKLGHDWGKEHRVAAGVEFAKSKGYVQTGDYCVVIHAD------ANQTRILLVE 498
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477    |    - |     497 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              482    489         

Chain F from PDB  Type:PROTEIN  Length:496
 aligned with KPYK_LEIME | Q27686 from UniProtKB/Swiss-Prot  Length:499

    Alignment length:502
                               1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497  
           KPYK_LEIME     - ---MSQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDADKLGHDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHADHKVKGYANQTRILLVE 499
               SCOP domains ----d3e0vf2 F:1-87,F:187-357 Pyruvate kinase, N-terminal domain                            d3e0vf1 F:88-186 Pyruvate kinase (PK)                                                              d3e0vf2 F:1-87,F:187-357 Pyruvate kinase, N-terminal domain                                                                                                                d3e0vf3 F:358-498 Pyruvate kinase, C-terminal domain                                                                                          SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh..............eeeee......hhhhhhhhhhhheeeeeee....hhhhhhhhhhhhhhhhhhh....eeeee......................eeeee.hhhhh......eee....hhhhh.....eeee....eeeeeeee....eeeeee...........ee...........hhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh.eeeehhhhhh...hhhhhhhhhhhhhhhhhhhh..eee....hhhhhh....hhhhhhhhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhh.....eeeee.hhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhh.......eeeeee..------..eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PYRUVATE_KINA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3e0v F  -3 GSHMSQLAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGQFVGGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDLPAVSAKDRVDLQFGVEQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDADKLGHDWGKEHRVAAGVEFAKSKGYVQTGDYCVVIHAD------ANQTRILLVE 498
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476     |   -  |    496  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               482    489         

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 18)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3E0V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3E0V)

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (KPYK_LEIME | Q27686)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0030955    potassium ion binding    Interacting selectively and non-covalently with potassium (K+) ions.
    GO:0004743    pyruvate kinase activity    Catalysis of the reaction: ATP + pyruvate = ADP + phosphoenolpyruvate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KPYK_LEIME | Q276861pkl 3e0w 3hqn 3hqo 3hqp 3hqq 3is4 3ktx 3pp7 3qv6 3qv7 3qv8 3srk

(-) Related Entries Specified in the PDB File

3e0w CRYSTAL STRUCTURE OF PYRUVATE KINASE FROM LEISHMANIA MEXICANA, LIGAND-FREE FORM