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(-) Description

Title :  CRYSTAL STRUCTURE OF A PSEUDOMONAS AERUGINOSA FADL HOMOLOGUE
 
Authors :  E. M. Hearn, D. R. Patel, B. W. Lepore, M. Indic, B. Van Den Berg
Date :  22 Jul 08  (Deposition) - 16 Dec 08  (Release) - 31 Mar 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  X
Keywords :  Beta Barrel, Outer Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. M. Hearn, D. R. Patel, B. W. Lepore, M. Indic, B. Van Den Berg
Transmembrane Passage Of Hydrophobic Compounds Through A Protein Channel Wall.
Nature V. 458 367 2009
PubMed-ID: 19182779  |  Reference-DOI: 10.1038/NATURE07678
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROBABLE OUTER MEMBRANE PROTEIN
    Chains: X
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBAD22
    Expression System Strain: C43(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 22-463
    Gene: PA4589
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Strain: PAO1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric/Biological Unit (2, 12)
No.NameCountTypeFull Name
1C8E11Ligand/Ion(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2SO41Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG X:281 , LYS X:320 , HOH X:474 , HOH X:543BINDING SITE FOR RESIDUE SO4 X 452
2AC2SOFTWARETYR X:180 , SER X:182 , LEU X:253 , ALA X:257 , THR X:262 , PRO X:263 , ARG X:418BINDING SITE FOR RESIDUE C8E X 453
3AC3SOFTWAREILE X:141 , GLN X:175 , LEU X:317 , TYR X:331 , TYR X:333 , THR X:364 , ASP X:370 , ILE X:373BINDING SITE FOR RESIDUE C8E X 454
4AC4SOFTWAREALA X:52 , ILE X:54 , LEU X:97 , GLY X:121 , MET X:122 , LYS X:140 , GLU X:142 , ILE X:373 , PRO X:374 , ASP X:375 , ARG X:378 , GLN X:404 , SER X:430BINDING SITE FOR RESIDUE C8E X 455
5AC5SOFTWAREASP X:377 , TYR X:379 , PHE X:405 , LYS X:407BINDING SITE FOR RESIDUE C8E X 456
6AC6SOFTWARETRP X:308 , TRP X:337BINDING SITE FOR RESIDUE C8E X 459
7AC7SOFTWARETHR X:210 , SER X:211 , PRO X:212BINDING SITE FOR RESIDUE C8E X 463

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3DWO)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3DWO)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3DWO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3DWO)

(-) Exons   (0, 0)

(no "Exon" information available for 3DWO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:444
 aligned with Q9HVJ6_PSEAE | Q9HVJ6 from UniProtKB/TrEMBL  Length:463

    Alignment length:444
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    463 
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460  | 
         Q9HVJ6_PSEAE    21 GGFMVPTTNTAGWGRAMAGGSLFPNDPSAAFNNPAAMAFIDKRIAQLTVNYADIDIKYNGDAYDYQGNPMTGGYQDGPGTPELGTNDGGQAGFGAWLPTGFLVVPINDRFAFGLSQVVPMGMRSTWDPNWKGRDFAVDTKIETIGLTGSLSFKVNDNFSLGAGVIIQRTSGFVSQNLDLYASAANSPGMGGIPFPASNSSALMRVKVDNTSPGFFAGAVWKPTDRDTLGFAYHAKIRNKLKGHYNLYDHDGGLTEGAIEGGTPGLAYPGLDLRMGASASARLDIPAYASLDWVHQFNDRLSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAGVAYDQTPTHNATRDPRIPDGDRYFASLGAGYRFQSMPELSIDAAYSRQFVKEVPLKTVNQDRLGGGRLDGRATSKGQVFSLSATYDF-   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3dwoX00 X:1-444 Outer membrane protein transport protein (OMPP1/FadL/TodX)                                                                                                                                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhh............hhhhhhhhhhhhh...eeeeeeeeeeeeeeeeeeee.............................eeeeeeeeeeeee....eeeeeeeeeeeeeeee............eeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeeeeehhhhhhhh...............eeeeeeeeeeeeeeeeeeee.....eeeeeeee.....eeeeeeeeee...hhhhhhhhhhhhhhhh.......eeeeeee.....eeeeeeeee....eeeeeeeeee.hhhh.eeeeee..eeeeeee.....eeeeeeeeeee....eeeeeeeeee.................eeeeeeeeeee......eeeeeeeeeeee..eee....hhhhh..eeeeeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3dwo X   1 AGFMVPTTNTAGWGRAMAGGSLFPNDPSAAFNNPAAMAFIDKRIAQLTVNYADIDIKYNGDAYDYQGNPMTGGYQDGPGTPELGTNDGGQAGFGAWLPTGFLVVPINDRFAFGLSQVVPMGMRSTWDPNWKGRDFAVDTKIETIGLTGSLSFKVNDNFSLGAGVIIQRTSGFVSQNLDLYASAANSPGMGGIPFPASNSSALMRVKVDNTSPGFFAGAVWKPTDRDTLGFAYHAKIRNKLKGHYNLYDHDGGLTEGAIEGGTPGLAYPGLDLRMGASASARLDIPAYASLDWVHQFNDRLSLGASATWTEWSSFQDLTLKSHGNTIVSIPYTYRNTWTLAVGGDYKVTDQWTMRAGVAYDQTPTHNATRDPRIPDGDRYFASLGAGYRFQSMPELSIDAAYSRQFVKEVPLKTVNQDRLGGGRLDGRATSKGQVFSLSATYDFH 444
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3DWO)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3DWO)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3DWO)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

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1t1l CRYSTAL STRUCTURE OF THE BACTERIAL FATTY ACID TRANSPORTER FADL (WILD-TYPE, HEXAGONAL SPACE GROUP P3121)
3dwn CRYSTAL STRUCTURE OF THE LONG-CHAIN FATTY ACID TRANSPORTER FADL MUTANT A77E/S100R