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(-) Description

Title :  CRYSTAL STRUCTURE OF NICOTINIC ACID MONONUCLEOTIDE ADENYLYLTRANSFERASE FROM BACILLUS ANTHRACIS
 
Authors :  S. Lu, C. D. Smith, Z. Yang, P. S. Pruett, L. Nagy, D. P. Mccombs, L. J. Delu W. J. Brouillette, C. G. Brouillette
Date :  18 Jul 08  (Deposition) - 04 Nov 08  (Release) - 12 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  C,D  (1x)
Biol. Unit 2:  A,B  (1x)
Keywords :  Alpha And Beta Protein, Rossmann Fold, Nad, Nucleotidyltransferase, Pyridine Nucleotide Biosynthesis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Lu, C. D. Smith, Z. Yang, P. S. Pruett, L. Nagy, D. Mccombs, L. J. Delucas, W. J. Brouillette, C. G. Brouillette
Structure Of Nicotinic Acid Mononucleotide Adenylyltransferase From Bacillus Anthracis.
Acta Crystallogr. , Sect. F V. 64 893 2008
PubMed-ID: 18931430  |  Reference-DOI: 10.1107/S1744309108029102

(-) Compounds

Molecule 1 - NICOTINATE (NICOTINAMIDE) NUCLEOTIDE ADENYLYLTRANSFERASE
    Chains: A, B, C, D
    EC Number: 2.7.7.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21B
    Expression System Vector Type: PLASMID
    Gene: NADD
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x):   CD
Biological Unit 2 (1x): AB  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1SO48Ligand/IonSULFATE ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:15 , HIS A:18 , SER A:155 , SER A:156 , HOH A:204BINDING SITE FOR RESIDUE SO4 A 202
2AC2SOFTWARETHR A:10 , LYS A:45 , ARG A:160BINDING SITE FOR RESIDUE SO4 A 203
3AC3SOFTWAREHIS B:15 , HIS B:18 , SER B:155 , SER B:156 , HOH B:208 , HOH B:210 , HOH B:211 , HOH B:213BINDING SITE FOR RESIDUE SO4 B 202
4AC4SOFTWARETHR B:10 , LYS B:45 , SER B:157 , ARG B:160 , HOH B:211BINDING SITE FOR RESIDUE SO4 B 203
5AC5SOFTWAREHIS C:15 , HIS C:18 , SER C:155 , SER C:156 , HOH C:205 , HOH C:210BINDING SITE FOR RESIDUE SO4 C 202
6AC6SOFTWAREARG B:139 , THR C:10 , SER C:157 , ARG C:160 , HOH C:205 , HOH C:210BINDING SITE FOR RESIDUE SO4 C 203
7AC7SOFTWAREHIS D:15 , HIS D:18 , SER D:155 , SER D:156 , HOH D:238BINDING SITE FOR RESIDUE SO4 D 202
8AC8SOFTWARETHR D:10 , SER D:157 , ARG D:160 , HOH D:238BINDING SITE FOR RESIDUE SO4 D 203

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3DV2)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Asp A:12 -Pro A:13
2Asp B:12 -Pro B:13
3Asp C:12 -Pro C:13
4Asp D:12 -Pro D:13

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3DV2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3DV2)

(-) Exons   (0, 0)

(no "Exon" information available for 3DV2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains d3dv2a_ A: Nicotinamide mononucleotide (NMN) adenylyltransferase                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhhh..eeeeee...hhhhh.....hhhhhhhhhhhhhh....eee.hhhhhh....hhhhhhhhhhhhh...eeeeeee.hhhhhhhhh.hhhhhhh..eeeeee...eee......eeee......hhhhhhhhhhhh.......hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dv2 A   2 RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYE 188
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       


Chain B from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains d3dv2b_ B: Nicotinamide mononucleotide (NMN) adenylyltransferase                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhh...eeeeee.............hhhhhhhhhhhhhh....eee.hhhhhh....hhhhhhhhhhhhh...eeeeeee.....hhhhh.hhhhhhhhh..eeee............eeee......hhhhhhhhhhh........hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dv2 B   2 RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYES 189
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181        


Chain C from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains d3dv2c_ C: Nicotinamide mononucleotide (NMN) adenylyltransferase                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhh...eeeeee...hhhhh.....hhhhhhhhhhhhhh....eee.hhhhhh....hhhhhhhhhhhhh...eeeeeee.hhhhhhhhh.hhhhhhhhheeeeee...eee......eeee......hhhhhhhhhhh........hhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dv2 C   2 RKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYE 188
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       


Chain D from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains d3dv2d_ D: Nicotinamide mononucleotide (NMN) adenylyltransferase                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhhh...eeeeee...hhhhh.....hhhhhhhhhhhhhh....eee.hhhhhh....hhhhhhhhhhhhh...eeeeeee.hhhhhhhhh.hhhhhhhhheeeeee............eeee......hhhhhhhhhhh........hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dv2 D   1 MRKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYES 189
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3DV2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3DV2)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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