3DR7 - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   GDP-PEROSAMINE SYNTHASE FROM CAULOBACTER CRESCENTUS WITH BOUND GDP-3-DEOXYPEROSAMINE

Authors :   H. M. Holden, P. D. Cook, A. E. Carney

Date :   10 Jul 08 (Deposition) - 14 Oct 08 (Release) - 17 May 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Perosamine, Pyridoxal Phosphate, O-Antigen, Lipopolysaccharide, Aspartate Aminotransferase, Deoxysugar, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. D. Cook, A. E. Carney, H. M. Holden
Accommodation Of Gdp-Linked Sugars In The Active Site Of Gdp-Perosamine Synthase
Biochemistry V. 47 10685 2008
PubMed-ID: 18795799 | Reference-DOI: 10.1021/BI801309Q

Molecule 1 - PUTATIVE PEROSAMINE SYNTHETASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28T
	Expression System Strain	:	HMS174
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PER
	Organism Scientific	:	CAULOBACTER CRESCENTUS
	Organism Taxid	:	190650
	Strain	:	CB15

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 10)

No.	Name	Count	Type	Full Name
1	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
2	GPD	4	Ligand/Ion	(2R,3S,5S,6R)-5-AMINO-3-HYDROXY-6-METHYL-OXAN-2-YL
3	LLP	4	Mod. Amino Acid	(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	GPD	2	Ligand/Ion	(2R,3S,5S,6R)-5-AMINO-3-HYDROXY-6-METHYL-OXAN-2-YL
3	LLP	2	Mod. Amino Acid	(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	GPD	2	Ligand/Ion	(2R,3S,5S,6R)-5-AMINO-3-HYDROXY-6-METHYL-OXAN-2-YL
3	LLP	2	Mod. Amino Acid	(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC ACID

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA A:10 , PRO A:12 , TYR A:86 , PHE A:183 , GLY A:184 , ASN A:185 , LLP A:186 , TRP A:286 , GLU A:313 , ARG A:315 , HOH A:589 , HOH A:670 , HOH A:763 , THR B:29 , TRP B:30 , ILE B:31 , SER B:32 , ARG B:220 , TYR B:221 , ARG B:231 , HOH B:1145	BINDING SITE FOR RESIDUE GPD A 500
2	AC2	SOFTWARE	THR A:29 , TRP A:30 , ILE A:31 , SER A:32 , VAL A:34 , ARG A:220 , TYR A:221 , HOH A:643 , HOH A:671 , HOH A:694 , HOH A:705 , HOH A:709 , ALA B:10 , PRO B:12 , TYR B:86 , PHE B:183 , GLY B:184 , ASN B:185 , LLP B:186 , TRP B:286 , GLU B:313 , ARG B:315 , HOH B:1153	BINDING SITE FOR RESIDUE GPD A 501
3	AC3	SOFTWARE	THR B:332 , ASP B:333 , ILE C:121 , THR C:122	BINDING SITE FOR RESIDUE EDO B 1040
4	AC4	SOFTWARE	ALA C:10 , PRO C:12 , TYR C:86 , PHE C:183 , GLY C:184 , ASN C:185 , LLP C:186 , TRP C:286 , GLU C:313 , ARG C:315 , HOH C:469 , THR D:29 , TRP D:30 , ILE D:31 , SER D:32 , ARG D:220 , TYR D:221	BINDING SITE FOR RESIDUE GPD D 500
5	AC5	SOFTWARE	THR C:29 , TRP C:30 , ILE C:31 , SER C:32 , ARG C:220 , SER D:8 , ALA D:10 , PRO D:12 , TYR D:86 , PHE D:183 , GLY D:184 , ASN D:185 , LLP D:186 , TRP D:286 , GLU D:313 , ARG D:315 , PHE D:318 , HOH D:1200	BINDING SITE FOR RESIDUE GPD D 501
6	AC6	SOFTWARE	ARG D:108 , THR D:273 , LYS D:274 , HIS D:276 , HOH D:1126 , HOH D:1160	BINDING SITE FOR RESIDUE EDO D 1041

(no "SS Bond" information available for 3DR7)

(no "Cis Peptide Bond" information available for 3DR7)

(no "SAP(SNP)/Variant" information available for 3DR7)

(no "PROSITE Motif" information available for 3DR7)

(no "Exon" information available for 3DR7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:368
 aligned with GDPPS_CAUCR | Q9A9H3 from UniProtKB/Swiss-Prot  Length:371

    Alignment length:368
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363        
          GDPPS_CAUCR     4 LPRISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNKIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV 371
               SCOP domains d3dr7a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 3dr7A01 A:4-103,A:110-246 Type I PLP-dependent aspartate aminotransferase-like (Major domain)       ------3dr7A01 A:4-103,A:110-246 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                            ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhh......hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh......eeeee....hhhhhhhhhh..eeeee.........hhhhhhhhh...eeee...hhhhh..hhhhhhhhhhhh..eeeee.......ee..ee......eeeee............eeeee.hhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee..............eeeee......hhhhhhhhhhhh....ee...hhhhhhhhhhhh...hhhhhhhhhheeee......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dr7 A   4 LPRISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNkIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV 371
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183  |    193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363        
                                                                                                                                                                                                                186-LLP

Chain B from PDB  Type:PROTEIN  Length:367
 aligned with GDPPS_CAUCR | Q9A9H3 from UniProtKB/Swiss-Prot  Length:371

    Alignment length:367
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       
          GDPPS_CAUCR     5 PRISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNKIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV 371
               SCOP domains d3dr7b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3dr7B01 B:5-103,B:110-246 Type I PLP-dependent aspartate aminotransferase-like (Major domain)      ------3dr7B01 B:5-103,B:110-246 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                            ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh......eeeee....hhhhhhhhhh..eeeee.........hhhhhhhhh...eeee...hhhhh..hhhhhhhhhhhh..eeeee.......ee..ee......eeeee............eeeee.hhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee..............eeeee......hhhhhhhhhhhh....ee...hhhhhhhhhhhh...hhhhhhhhhheeee......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dr7 B   5 PRISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNkIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV 371
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184 |     194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       
                                                                                                                                                                                                               186-LLP

Chain C from PDB  Type:PROTEIN  Length:367
 aligned with GDPPS_CAUCR | Q9A9H3 from UniProtKB/Swiss-Prot  Length:371

    Alignment length:367
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       
          GDPPS_CAUCR     5 PRISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNKIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV 371
               SCOP domains d3dr7c_ C: automated matches                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3dr7C01 C:5-103,C:110-246 Type I PLP-dependent aspartate aminotransferase-like (Major domain)      ------3dr7C01 C:5-103,C:110-246 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                            ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh......eeeee....hhhhhhhhhh..eeeee.........hhhhhhhhh...eeee...hhhhh..hhhhhhhhhhhh..eeeee.......ee..ee......eeeee............eeeee.hhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..ee..............eeeee......hhhhhhhhhhhh....ee...hhhhhhhhhhhh...hhhhhhhhhheeee......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dr7 C   5 PRISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNkIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV 371
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184 |     194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       
                                                                                                                                                                                                               186-LLP

Chain D from PDB  Type:PROTEIN  Length:367
 aligned with GDPPS_CAUCR | Q9A9H3 from UniProtKB/Swiss-Prot  Length:371

    Alignment length:367
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       
          GDPPS_CAUCR     5 PRISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNKIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV 371
               SCOP domains d3dr7d_ D: automated matches                                                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3dr7D01 D:5-103,D:110-246 Type I PLP-dependent aspartate aminotransferase-like (Major domain)      ------3dr7D01 D:5-103,D:110-246 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                            ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhh......hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh......eeeee....hhhhhhhhhh..eeeee.........hhhhhhhhh...eeee...hhhhh..hhhhhhhhhhhh..eeeee.......ee..ee......eeeee............eeeee.hhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee..............eeeee......hhhhhhhhhhhh....ee...hhhhhhhhhhhh...hhhhhhhhhheeee......hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dr7 D   5 PRISVAAPRLDGNERDYVLECMDTTWISSVGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMGIGPGDEVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALITPRTKAIMPVHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSLGDCATFSFFGNkIITTGEGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGEGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVLV 371
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184 |     194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       
                                                                                                                                                                                                               186-LLP

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: PLP-dependent transferase-like (627)

Superfamily: PLP-dependent transferases (625)

Family: automated matches (163)

Protein domain: automated matches (163)

Caulobacter crescentus [TaxId: 190650] (3)

1a	d3dr7a_	A:
1b	d3dr7b_	B:
1c	d3dr7c_	C:
1d	d3dr7d_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Aspartate Aminotransferase; domain 2 (384)

Homologous Superfamily: Type I PLP-dependent aspartate aminotransferase-like (Major domain) (384)

Caulobacter crescentus. Strain: cb15. (2)

1a	3dr7A01	A:4-103,A:110-246
1b	3dr7B01	B:5-103,B:110-246
1c	3dr7C01	C:5-103,C:110-246
1d	3dr7D01	D:5-103,D:110-246

(no "Pfam Domain" information available for 3DR7)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (GDPPS_CAUCR | Q9A9H3)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0008483	transaminase activity	Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0009243	O antigen biosynthetic process	The chemical reactions and pathways resulting in the formation of the O side chain of a lipopolysaccharide, which determines the antigenic specificity of the organism. It is made up of about 50 repeating units of a branched tetrasaccharide.
	GO:0009103	lipopolysaccharide biosynthetic process	The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.

Asymmetric Unit
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	3dr7
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	GDPPS_CAUCR \| Q9A9H3	:	3bn1 3dr4

Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 10)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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