3DOI - JenaLib

Title :   CRYSTAL STRUCTURE OF A THERMOSTABLE ESTERASE COMPLEX WITH PARAOXON

Authors :   M. Levisson, L. Sun, S. Hendriks, B. W. Dijkstra, J. Van Der Oost, S. W. M. Kengen

Date :   04 Jul 08 (Deposition) - 17 Feb 09 (Release) - 17 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (3x)
Biol. Unit 2: A  (1x)
Biol. Unit 3: B  (1x)

Keywords :   Alpha-Beta Hydrolase, Beta Sheet (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Levisson, L. Sun, S. Hendriks, P. Swinkels, T. Akveld, J. B. Bultema, A. Barendregt, R. H. H. Van Den Heuvel, B. W. Dijkstra, J. Van Der Oost, S. W. M. Kengen
Crystal Structure And Biochemical Properties Of A Novel Thermostable Esterase Containing An Immunoglobulin-Like Domain.
J. Mol. Biol. V. 385 949 2009
PubMed-ID: 19013466 | Reference-DOI: 10.1016/J.JMB.2008.10.075
(for further references see the PDB file header)

Compounds

Molecule 1 - ESTERASE
	Chains	:	A, B
	EC Number	:	3.1.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-24D
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 17-395
	Gene	:	TM_0033
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	2336
	Strain	:	MSB8

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (3x)	:	A	B
Biological Unit 2 (1x)	:	A
Biological Unit 3 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (1, 2)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	DEP	2	Ligand/Ion	DIETHYL PHOSPHONATE

Biological Unit 1 (1, 6)

No.	Name	Count	Type	Full Name
1	DEP	6	Ligand/Ion	DIETHYL PHOSPHONATE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	DEP	1	Ligand/Ion	DIETHYL PHOSPHONATE

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	DEP	1	Ligand/Ion	DIETHYL PHOSPHONATE

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:197 , ALA A:198 , GLY A:199 , SER A:286 , MET A:287 , HIS A:374	BINDING SITE FOR RESIDUE DEP A 401
2	AC2	SOFTWARE	PHE B:116 , ALA B:198 , SER B:286 , MET B:287 , HIS B:374	BINDING SITE FOR RESIDUE DEP B 401

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:375
 aligned with Q9WXP0_THEMA | Q9WXP0 from UniProtKB/TrEMBL  Length:395

    Alignment length:375
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390     
         Q9WXP0_THEMA    21 VKSVTLITKVFPEGEKVCAVVIEYPVEIDGQKLSPDQFSVKVKTGDTYSSRTITKVYANNSGGLSFSIFNNRGKYVVLELSTEDLHSNTIVFGPNFLNTRMKLDYIVSQLVPIFDVDGNEVEPFTSKQTDEKHLIIDDFLAFTFKDPETGVEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVSKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDPHGSWIPTYENQEAIEWLFEQSR 395
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..eeeeeeeeeeeeeeee.hhhhhh.eeeeee....eeee.eeeeeee............eeeeeeeee...hhhhh................eeeee..............eeee..eeee......eeeeee......eeeeeee..........eeeeeee.hhhhh....hhhhhh...hhhhhhhhhhh....eeeee.........hhhhh.......hhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhh.eeeeee.......hhhhhhhhhhhhhh...eeeeee..hhhhhh......hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3doi A  21 VKSVTLITKVFPEGEKVCAVVIEYPVEIDGQKLSPDQFSVKVKTGDTYSSRTITKVYANNSGGLSFSIFNNRGKYVVLELSTEDLHSNTIVFGPNFLNTRMKLDYIVSQLVPIFDVDGNEVEPFTSKQTDEKHLIIDDFLAFTFKDPETGVEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVSKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDPHGSWIPTYENQEAIEWLFEQSR 395
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390

Chain B from PDB  Type:PROTEIN  Length:373
 aligned with Q9WXP0_THEMA | Q9WXP0 from UniProtKB/TrEMBL  Length:395

    Alignment length:375
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390     
         Q9WXP0_THEMA    21 VKSVTLITKVFPEGEKVCAVVIEYPVEIDGQKLSPDQFSVKVKTGDTYSSRTITKVYANNSGGLSFSIFNNRGKYVVLELSTEDLHSNTIVFGPNFLNTRMKLDYIVSQLVPIFDVDGNEVEPFTSKQTDEKHLIIDDFLAFTFKDPETGVEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRENPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVSKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDPHGSWIPTYENQEAIEWLFEQSR 395
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee..eeeeeeeeee.....hhhhhhhh.eeeeeee..eeee..eeeeeee...............eeeeee.........eeee...eeee....eeeee...ee.....ee..eeee.......hhhhheeeeee......eeeeeee..........eeeeeeee.hhhh....hhhhhh....hhhhhhhhhh....eeeee........hhhhh.--.....hhhhhhhhhhhhhhhhhh.eeeeeeeeeeehhhhhhhhhhhhhh.....eeeee....hhhhhhhhh...eeeeee.......hhhhhhhhhhhhhh...eeeeee..hhhhhh......hhhhhh.hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3doi B  21 VKSVTLITKVFPEGEKVCAVVIEYPVEIDGQKLSPDQFSVKVKTGDTYSSRTITKVYANNSGGLSFSIFNNRGKYVVLELSTEDLHSNTIVFGPNFLNTRMKLDYIVSQLVPIFDVDGNEVEPFTSKQTDEKHLIIDDFLAFTFKDPETGVEIPYRLFVPKDVNPDRKYPLVVFLHGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTD--NPFNPEKPLLAVIKIIRKLLDEYNIDENRIYITGLSMGGYGTWTAIMEFPELFAAAIPICGGGDVSKVERIKDIPIWVFHAEDDPVVPVENSRVLVKKLAEIGGKVRYTEYEKGFMEKHGWDPHGSWIPTYENQEAIEWLFEQSR 395
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       | -|      260       270       280       290       300       310       320       330       340       350       360       370       380       390     
                                                                                                                                                                                                                                                             248  |                                                                                                                                                
                                                                                                                                                                                                                                                                251

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

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	Cis Peptide Bonds
		Arg B:92 - Gly B:93	[ RasMol ]
		Gly A:138 - Asn A:139	[ RasMol ]
		Gly A:312 - Gly A:313	[ RasMol ]
		Gly B:138 - Asn B:139	[ RasMol ]

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