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(-) Description

Title :  CRYSTAL STRUCTURE OF RAPA, A SWI2/SNF2 PROTEIN THAT RECYCLES RNA POLYMERASE DURING TRANSCRIPTION
 
Authors :  G. Shaw, J. Gan, Y. N. Zhou, R. Zhang, A. Joachimiak, D. J. Jin, X. Ji
Date :  01 Jul 08  (Deposition) - 09 Sep 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Rapa, Swf2/Snf2, Transcription Factor, Rna Polymerase Recycling, Activator, Atp-Binding, Dna-Binding, Helicase, Hydrolase, Nucleotide-Binding, Transcription Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Shaw, J. Gan, Y. N. Zhou, H. Zhi, P. Subburaman, R. Zhang, A. Joachimiak, D. J. Jin, X. Ji
Structure Of Rapa, A Swi2/Snf2 Protein That Recycles Rna Polymerase During Transcription.
Structure V. 16 1417 2008
PubMed-ID: 18786404  |  Reference-DOI: 10.1016/J.STR.2008.06.012
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RNA POLYMERASE-ASSOCIATED PROTEIN RAPA
    Atcc: 47076
    Chains: A, B
    EC Number: 3.6.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RAPA, HEPA, YABA, B0059, JW0058
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI K12
    Organism Taxid: 83333
    Strain: K12 / MG1655
    Synonym: ATP-DEPENDENT HELICASE HEPA

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 48)

Asymmetric Unit (2, 48)
No.NameCountTypeFull Name
1MSE46Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 24)
No.NameCountTypeFull Name
1MSE23Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 24)
No.NameCountTypeFull Name
1MSE23Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:178 , VAL A:179 , GLY A:180 , LEU A:181 , GLY A:182 , LYS A:183 , THR A:184BINDING SITE FOR RESIDUE SO4 A 1001
2AC2SOFTWAREGLU B:178 , GLY B:180 , LEU B:181 , GLY B:182 , LYS B:183 , THR B:184BINDING SITE FOR RESIDUE SO4 B 1001

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:510 -A:562
2B:510 -B:562

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3DMQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3DMQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3DMQ)

(-) Exons   (0, 0)

(no "Exon" information available for 3DMQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:961
 aligned with RAPA_ECOLI | P60240 from UniProtKB/Swiss-Prot  Length:968

    Alignment length:961
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961 
           RAPA_ECOLI     2 PFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRL 962
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..hhhh.eeeeeee...eeeee......eeeee.....eee.......eee.....eeeeeeee......eeeeee.......eeee.hhh.......hhhhhh......hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhh...eeee......hhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhhh....ee.hhhhhhhhhhh.........eeeehhhhhhh....hhhhhh....eeee.............hhhhhhhhhhhh....eee............hhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.......hhhhh..............hhhhh.........hhhhhhhhhhhhh.....ee................eeee..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhh......ee...hhhhhhhhhhhhh.....eeee......hhhhhhhhhhhh.....eeee...............eee......hhhhhhhhhhh..........eeeeeee..hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhhhhh...ee.....eeee..................ee.hhhhhhh..........hhhhhhhhhhhhh....eee.................ee..eeee...hhhhh............ee..........hhhhhh...........hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh..eeee..eee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dmq A   2 PFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVmFNPGDTITSHDGWQmQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRmDRFALRYRARKYSSEQFRmPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGmILHQQLLSGAAERVLIIVPETLQHQWLVEmLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGmESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAmLLAGNKLSNDELNmLGEmIGEQDIEPLLQAANSDSEDAQSARQELVSmLmDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGImGARKSAEDRARDmLYPERIYQEFEGDNATWWNFDPRVEWLmGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGmSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHmVmFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAmNLFDIIGINQDDRGDNmIVLTPSDHmLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRmLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVmESLDQAGWRLDALRL 962
                                    11        21        31        41        51  |     61       |71        81        91       101       111       121 |     131       141|      151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351      |361       371|   |  381       391       401    | |411       421       431       441       451  |    461     | 471       481       491   |   501       511       521       531      |541       551       561       571      |581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731     | 741    |  751       761       771       781       791       801       811       821       831       841 |     851       861       871       881       891       901       911       921       931       941     | 951       961 
                                                                               54-MSE         69-MSE                                               123-MSE            142-MSE                                        189-MSE                       219-MSE                                                                                               321-MSE                              358-MSE       372-MSE                           406-MSE                                         454-MSE      467-MSE                     495-MSE                                    538-MSE                                 578-MSE                                                                                                                                       720-MSE          737-MSE  746-MSE                                                                                          843-MSE                                                                                                 947-MSE           
                                                                                                                                                                                                                                                                                                                                                                                                                376-MSE                         408-MSE                                                                                                                                                                     580-MSE                                                                                                                                                                                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:961
 aligned with RAPA_ECOLI | P60240 from UniProtKB/Swiss-Prot  Length:968

    Alignment length:961
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901       911       921       931       941       951       961 
           RAPA_ECOLI     2 PFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRL 962
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee..hhhh.eeeeeee...eeeee......eeeee.....eee.......eee.....eeeeeeeee....eeeeeee.......eeee.hhh.......hhhhhh......hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhh...eeee......hhhhhhhhhhhhhhhh.....eeee....hhhhhhhhhhhh.....ee.hhhhhhhhhhh.........eeeehhhhhhh....hhhhhh....eeee.............hhhhhhhhhhhh....eee............hhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.......hhhhh..............hhhhhh........hhhhhhhhhhhhh.....ee................eeee..hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh......ee...hhhhhhhhhhhhh.....eeee......hhhhhhhhhhhh.....eeee...............eee......hhhhhhhhhhh..........eeeeeee..hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhhhhh...ee.....eeee..................ee.hhhhhhh..........hhhhhhhhhhhhh....eee.................ee..eeee...hhhhh............ee..........hhhhhh...........hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh..eeee..eee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dmq B   2 PFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVmFNPGDTITSHDGWQmQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRmDRFALRYRARKYSSEQFRmPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGmILHQQLLSGAAERVLIIVPETLQHQWLVEmLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGmESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAmLLAGNKLSNDELNmLGEmIGEQDIEPLLQAANSDSEDAQSARQELVSmLmDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGImGARKSAEDRARDmLYPERIYQEFEGDNATWWNFDPRVEWLmGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGmSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHmVmFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAmNLFDIIGINQDDRGDNmIVLTPSDHmLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRmLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVmESLDQAGWRLDALRL 962
                                    11        21        31        41        51  |     61       |71        81        91       101       111       121 |     131       141|      151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351      |361       371|   |  381       391       401    | |411       421       431       441       451  |    461     | 471       481       491   |   501       511       521       531      |541       551       561       571      |581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731     | 741    |  751       761       771       781       791       801       811       821       831       841 |     851       861       871       881       891       901       911       921       931       941     | 951       961 
                                                                               54-MSE         69-MSE                                               123-MSE            142-MSE                                        189-MSE                       219-MSE                                                                                               321-MSE                              358-MSE       372-MSE                           406-MSE                                         454-MSE      467-MSE                     495-MSE                                    538-MSE                                 578-MSE                                                                                                                                       720-MSE          737-MSE  746-MSE                                                                                          843-MSE                                                                                                 947-MSE           
                                                                                                                                                                                                                                                                                                                                                                                                                376-MSE                         408-MSE                                                                                                                                                                     580-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3DMQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3DMQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3DMQ)

(-) Gene Ontology  (13, 13)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (RAPA_ECOLI | P60240)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0070063    RNA polymerase binding    Interacting selectively and non-covalently with an RNA polymerase molecule or complex.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016817    hydrolase activity, acting on acid anhydrides    Catalysis of the hydrolysis of any acid anhydride.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0045893    positive regulation of transcription, DNA-templated    Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  3dmq
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  3.6.1.-
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        RAPA_ECOLI | P60240: 4s20

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