3DER - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF DIPEPTIDE EPIMERASE FROM THERMOTOGA MARITIMA COMPLEXED WITH L-ALA-L-LYS DIPEPTIDE

Authors :   A. A. Fedorov, E. V. Fedorov, H. J. Imker, J. A. Gerlt, S. C. Almo

Date :   10 Jun 08 (Deposition) - 25 Nov 08 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C (1x),D (1x)
Biol. Unit 3: A,B,C,D  (2x)

Keywords :   Dipeptide Epimerase, Thermotoga Maritima, Enzymatic Function, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Kalyanaraman, H. J. Imker, A. A. Fedorov, E. V. Fedorov, M. E. Glasner, P. C. Babbitt, S. C. Almo, J. A. Gerlt, M. P. Jacobson
Discovery Of A Dipeptide Epimerase Enzymatic Function Guided By Homology Modeling And Virtual Screening.
Structure V. 16 1668 2008
PubMed-ID: 19000819 | Reference-DOI: 10.1016/J.STR.2008.08.015
(for further references see the PDB file header)

Molecule 1 - MUCONATE CYCLOISOMERASE
	Atcc	:	43589
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	TM_0006
	Organism Scientific	:	THERMOTOGA MARITIMA MSB8
	Organism Taxid	:	243274
	Strain	:	MSB8 / DSM 3109 / JCM 10099

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C (1x)	D (1x)
Biological Unit 3 (2x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	ALA	4	Mod. Amino Acid	ALANINE
2	LYS	4	Mod. Amino Acid	LYSINE
3	MG	4	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	ALA	2	Mod. Amino Acid	ALANINE
2	LYS	2	Mod. Amino Acid	LYSINE
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	ALA	1	Mod. Amino Acid	ALANINE
2	LYS	1	Mod. Amino Acid	LYSINE
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 3 (2, 16)

No.	Name	Count	Type	Full Name
1	ALA	8	Mod. Amino Acid	ALANINE
2	LYS	8	Mod. Amino Acid	LYSINE
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:159 , ASP A:188 , GLU A:216 , ASP A:241 , LYS A:412	BINDING SITE FOR RESIDUE MG A 401
2	AC2	SOFTWARE	LYS B:159 , ASP B:188 , GLU B:216 , ASP B:241 , LYS B:412	BINDING SITE FOR RESIDUE MG B 401
3	AC3	SOFTWARE	LYS C:159 , ASP C:188 , GLU C:216 , ASP C:241 , LYS C:412	BINDING SITE FOR RESIDUE MG C 401
4	AC4	SOFTWARE	LYS D:159 , ASP D:188 , GLU D:216 , ASP D:241 , LYS D:412	BINDING SITE FOR RESIDUE MG D 401

(no "SS Bond" information available for 3DER)

(no "Cis Peptide Bond" information available for 3DER)

(no "SAP(SNP)/Variant" information available for 3DER)

(no "PROSITE Motif" information available for 3DER)

(no "Exon" information available for 3DER)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:343
 aligned with AEEP_THEMA | Q9WXM1 from UniProtKB/Swiss-Prot  Length:345

    Alignment length:343
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342   
           AEEP_THEMA     3 RIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ 345
               SCOP domains d3dera1 A:3-124 automated matches                                                                                         d3dera2 A:125-343 automated matches                                                                                                                                                                                        -- SCOP domains
               CATH domains 3derA01 A:3-115 Enolase-like, N-terminal domain                                                                  3derA02 A:116-343 Enolase superfamily                                                                                                                                                                                               -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeee..hhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.hhhhhh.....eee..eee...hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhh...ee..hhhhhh.........eee..eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3der A   3 RIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKAK 412
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342|| 
                                                                                                                                                                                                                                                                                                                                                                              343| 
                                                                                                                                                                                                                                                                                                                                                                               411

Chain B from PDB  Type:PROTEIN  Length:343
 aligned with AEEP_THEMA | Q9WXM1 from UniProtKB/Swiss-Prot  Length:345

    Alignment length:343
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342   
           AEEP_THEMA     3 RIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ 345
               SCOP domains d3derb1 B:3-124 automated matches                                                                                         d3derb2 B:125-343 automated matches                                                                                                                                                                                        -- SCOP domains
               CATH domains 3derB01 B:3-115 Enolase-like, N-terminal domain                                                                  3derB02 B:116-343 Enolase superfamily                                                                                                                                                                                               -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeee..hhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh..hhhhhh.....eee..eee...hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhh.....eee......hhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhh...ee..hhhhhh.........eee..eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3der B   3 RIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKAK 412
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342|| 
                                                                                                                                                                                                                                                                                                                                                                              343| 
                                                                                                                                                                                                                                                                                                                                                                               411

Chain C from PDB  Type:PROTEIN  Length:343
 aligned with AEEP_THEMA | Q9WXM1 from UniProtKB/Swiss-Prot  Length:345

    Alignment length:343
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342   
           AEEP_THEMA     3 RIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ 345
               SCOP domains d3derc1 C:3-124 automated matches                                                                                         d3derc2 C:125-343 automated matches                                                                                                                                                                                        -- SCOP domains
               CATH domains 3derC01 C:3-115 Enolase-like, N-terminal domain                                                                  3derC02 C:116-343 Enolase superfamily                                                                                                                                                                                               -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeee..hhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.hhhhhh.....eee..eee...hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhh.....eee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhh...ee..hhhhhh.........eee..eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3der C   3 RIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKAK 412
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342|| 
                                                                                                                                                                                                                                                                                                                                                                              343| 
                                                                                                                                                                                                                                                                                                                                                                               411

Chain D from PDB  Type:PROTEIN  Length:343
 aligned with AEEP_THEMA | Q9WXM1 from UniProtKB/Swiss-Prot  Length:345

    Alignment length:343
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342   
           AEEP_THEMA     3 RIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ 345
               SCOP domains d3derd1 D:3-124 automated matches                                                                                         d3derd2 D:125-343 automated matches                                                                                                                                                                                        -- SCOP domains
               CATH domains 3derD01 D:3-115 Enolase-like, N-terminal domain                                                                  3derD02 D:116-343 Enolase superfamily                                                                                                                                                                                               -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeee..hhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.hhhhhh.....eee..eee...hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhhhhhh...ee..hhhhhh.........eee..eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3der D   3 RIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVEIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKAK 412
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342|| 
                                                                                                                                                                                                                                                                                                                                                                              343| 
                                                                                                                                                                                                                                                                                                                                                                               411

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Enolase N-terminal domain-like (211)

Superfamily: Enolase N-terminal domain-like (211)

Family: automated matches (123)

Protein domain: automated matches (123)

Thermotoga maritima [TaxId: 243274] (5)

1a	d3dera1	A:3-124
1b	d3derb1	B:3-124
1c	d3derc1	C:3-124
1d	d3derd1	D:3-124

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Enolase C-terminal domain-like (212)

Family: automated matches (102)

Protein domain: automated matches (102)

Thermotoga maritima [TaxId: 243274] (5)

2a	d3dera2	A:125-343
2b	d3derb2	B:125-343
2c	d3derc2	C:125-343
2d	d3derd2	D:125-343

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Enolase-like; domain 1 (252)

Homologous Superfamily: Enolase-like, N-terminal domain (130)

Thermotoga maritima msb8. Organism_taxid: 243274. Strain: msb8 / dsm 3109 / jcm 10099. (4)

1a	3derA01	A:3-115
1b	3derB01	B:3-115
1c	3derC01	C:3-115
1d	3derD01	D:3-115

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Enolase superfamily (142)

Thermotoga maritima msb8. Organism_taxid: 243274. Strain: msb8 / dsm 3109 / jcm 10099. (4)

2a	3derA02	A:116-343
2b	3derB02	B:116-343
2c	3derC02	C:116-343
2d	3derD02	D:116-343

(no "Pfam Domain" information available for 3DER)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (AEEP_THEMA | Q9WXM1)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016853	isomerase activity	Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	Catalysis of a reaction that alters the configuration of one or more chiral centers in an amino acid.
biological process
	GO:0016998	cell wall macromolecule catabolic process	The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
	GO:0071555	cell wall organization	A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Asymmetric Unit
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	3der
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UniProtKB/Swiss-Prot
	AEEP_THEMA \| Q9WXM1	:	2zad 3deq 3des 3dfy

3deq	THE SAME PROTEIN COMPLEXED WITH L-ALA-L-LEU DIPEPTIDE
3des	THE SAME PROTEIN COMPLEXED WITH L-ALA-L-PHE DIPEPTIDE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 12)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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Exons (0, 0)

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SCOP Domains (2, 8)

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Gene Ontology (7, 7)

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Related Entries Specified in the PDB File