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(-) Description

Title :  CRYSTAL STRUCTURE OF THE THERMOTOGA MARITIMA SPOUT FAMILY RNA-METHYLTRANSFERASE PROTEIN TM1570 IN COMPLEX WITH S-ADENOSYL-L-METHIONINE
 
Authors :  D. J. Kim, H. S. Kim, S. J. Lee, S. W. Suh
Date :  04 Jun 08  (Deposition) - 09 Dec 08  (Release) - 09 Dec 08  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  X
Biol. Unit 1:  X  (2x)
Keywords :  Trefoil Knot, Spout Mtase, Adomet Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Kim, H. S. Kim, S. J. Lee, S. W. Suh
Crystal Structure Of Thermotoga Maritima Spout Superfamily Rna Methyltransferase Tm1570 In Complex With S-Adenosyl-L-Methionine
Proteins V. 74 245 2009
PubMed-ID: 18831037  |  Reference-DOI: 10.1002/PROT.22249
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN TM_1570
    Chains: X
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28B
    Expression System Strain: ROSETTA(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM_1570
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336
    Synonym: ADOMET

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : X
Biological Unit 1 (2x): X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SAM1Ligand/IonS-ADENOSYLMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1SAM2Ligand/IonS-ADENOSYLMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR X:111 , SER X:112 , ALA X:113 , LEU X:140 , GLY X:141 , GLY X:143 , GLY X:145 , PRO X:160 , ILE X:161 , ASN X:168 , LEU X:170 , SER X:171 , VAL X:172 , ALA X:175 , HOH X:5483 , HOH X:5529BINDING SITE FOR RESIDUE SAM X5452

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3DCM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Tyr X:12 -Pro X:13

 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain X from PDB  Type:PROTEIN  Length:188
 aligned with Y1570_THEMA | Q9X1Q6 from UniProtKB/Swiss-Prot  Length:192

    Alignment length:188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
          Y1570_THEMA     1 MLEKVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGTGWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIGENY 188
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3dcmX00 X:1-188  [code=3.40.1280.10, no name defined]                                                                                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee...ee.....ee....hhhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhhhhhhhhhhh...hhhhhh.eeee.hhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhh...eeeee......hhhhhh...ee.............hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3dcm X   1 MLEKVYVALIHYPIKGKDGSIISTAVTNLDVHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIIIETEKPVLILLGTGWGLPDEILEISDYVLEPIRAQSDFNHLSVRAAAAIIIDRLIGENY 188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3DCM)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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