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(-) Description

Title :  CRYSTAL STRUCTURE OF ORF12 FROM THE LACTOCOCCUS LACTIS BACTERIOPHAGE P2
 
Authors :  M. I. Siponen, S. Spinelli, J. Lichiere, S. Moineau, C. Cambillau, V. Ca
Date :  23 May 08  (Deposition) - 14 Apr 09  (Release) - 21 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Biol. Unit 4:  C  (1x)
Keywords :  Lactococcal Phage P2, Orf12, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Siponen, G. Sciara, M. Villion, S. Spinelli, C. Cambillau, S. Moineau, V. Campanacci
Crystal Structure Of Orf12 From Lactococcus Lactis Phage P2 Identifies A Tape Measure Protein Chaperone
J. Bacteriol. V. 191 728 2009
PubMed-ID: 19047351  |  Reference-DOI: 10.1128/JB.01363-08

(-) Compounds

Molecule 1 - ORF12
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PETG20A
    Expression System Strain: ROSETTA PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ORF12
    Organism Scientific: LACTOCOCCUS PHAGE P2
    Organism Taxid: 254252

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC
Biological Unit 2 (1x): A  
Biological Unit 3 (1x):  B 
Biological Unit 4 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3D8L)

(-) Sites  (0, 0)

(no "Site" information available for 3D8L)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3D8L)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3D8L)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3D8L)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3D8L)

(-) Sequences/Alignments

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Chain A from PDB  Type:PROTEIN  Length:91
 aligned with GP12_BPLP2 | D3WAD0 from UniProtKB/Swiss-Prot  Length:91

    Alignment length:91
                                    10        20        30        40        50        60        70        80        90 
            GP12_BPLP2    1 MAKQLSTARKFKMITGKDLFQQQKAMDTELKKEDGEITDLMEFVQYGLYLALFQDNIVKAKSDFSDFRSSFEFDTDGKGLKELVELWQKEI 91
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.......hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  3d8l A  1 GAKQLSTARKFKMITGKDLFQQQKAMDTELKKEDGEITDLMEFVQYGLYLALFQDNIVKAKSDFSDFRSSFEFDTDGKGLKELVELWQKEI 91
                                    10        20        30        40        50        60        70        80        90 


Chain B from PDB  Type:PROTEIN  Length:91
 aligned with GP12_BPLP2 | D3WAD0 from UniProtKB/Swiss-Prot  Length:91

    Alignment length:91
                                    10        20        30        40        50        60        70        80        90 
            GP12_BPLP2    1 MAKQLSTARKFKMITGKDLFQQQKAMDTELKKEDGEITDLMEFVQYGLYLALFQDNIVKAKSDFSDFRSSFEFDTDGKGLKELVELWQKEI 91
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  3d8l B  1 GAKQLSTARKFKMITGKDLFQQQKAMDTELKKEDGEITDLMEFVQYGLYLALFQDNIVKAKSDFSDFRSSFEFDTDGKGLKELVELWQKEI 91
                                    10        20        30        40        50        60        70        80        90 


Chain C from PDB  Type:PROTEIN  Length:88
 aligned with GP12_BPLP2 | D3WAD0 from UniProtKB/Swiss-Prot  Length:91

    Alignment length:88
                                    13        23        33        43        53        63        73        83        
            GP12_BPLP2    4 QLSTARKFKMITGKDLFQQQKAMDTELKKEDGEITDLMEFVQYGLYLALFQDNIVKAKSDFSDFRSSFEFDTDGKGLKELVELWQKEI 91
               SCOP domains ---------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh.......hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------- Transcript
                  3d8l C  4 QLSTARKFKMITGKDLFQQQKAMDTELKKEDGEITDLMEFVQYGLYLALFQDNIVKAKSDFSDFRSSFEFDTDGKGLKELVELWQKEI 91
                                    13        23        33        43        53        63        73        83
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3D8L)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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