3CQF - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF ANTHROLYSIN O (ALO)

Authors :   R. W. Bourdeau, E. Malito, W. J. Tang

Date :   02 Apr 08 (Deposition) - 17 Mar 09 (Release) - 02 Jun 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Anthrolysin O, X-Ray Crystallography, Cytolysin, Anthrax, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. W. Bourdeau, E. Malito, A. Chenal, B. L. Bishop, M. W. Musch, M. L. Villereal, E. B. Chang, E. M. Mosser, R. F. Rest, W. J. Tang
Cellular Functions And X-Ray Structure Of Anthrolysin O, A Cholesterol-Dependent Cytolysin Secreted By Bacillus Anthracis
J. Biol. Chem. V. 284 14645 2009
PubMed-ID: 19307185 | Reference-DOI: 10.1074/JBC.M807631200
(for further references see the PDB file header)

Molecule 1 - THIOL-ACTIVATED CYTOLYSIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PPROEX-1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	BACILLUS ANTHRACIS
	Organism Taxid	:	1392

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3CQF)

(no "Site" information available for 3CQF)

(no "SS Bond" information available for 3CQF)

Asymmetric Unit

No.	Residues
1	Ala A:450	-	His A:451
2	Ala B:450	-	His B:451

(no "SAP(SNP)/Variant" information available for 3CQF)

(no "PROSITE Motif" information available for 3CQF)

(no "Exon" information available for 3CQF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:462
 aligned with Q81N62_BACAN | Q81N62 from UniProtKB/TrEMBL  Length:512

    Alignment length:467
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       
         Q81N62_BACAN    46 KNASDINTGIANLKYDSRDILAVNGDKVESFIPKESINSNGKFVVVEREKKSLTTSPVDILIIDSVVNRTYPGAVQLANKAFADNQPSLLVAKRKPLNISIDLPGMRKENTITVQNPTYGNVAGAVDDLVSTWNEKYSTTHTLPARMQYTESMVYSKSQIASALNVNAKYLDNSLNIDFNAVANGEKKVMVAAYKQIFYTVSAELPNNPSDLFDNSVTFDELTRKGVSNSAPPVMVSNVAYGRTVYVKLETTSKSKDVQAAFKALLKNNSVETSGQYKDIFEESTFTAVVLGGDAKEHNKVVTKDFNEIRNIIKDNAELSFKNPAYPISYTSTFLKDNATAAVHNNTDYIETTTTEYSSAKMTLDHYGAYVAQFDVSWDEFTFDQNGKEVLTHKTWEGSGKDKTAHYSTVIPLPPNSKNIKIVARECTGLAWEWWRTIINEQNVPLTNEIKVSIGGTTLYPTATISH 512
               SCOP domains d3cqfa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 3cqfA01              3cqfA02 A:67-102,A:387-403          3cqfA01 A:46-66,A:103-191,A:242-287,A:363-386 HIV-1 Reverse Transcriptase; Chain         --------------------------------------------------3cqfA01 A:46-66,A:103-191,A:242-287,A:363-386 ---------------------------------------------------------------------------3cqfA01                 3cqfA02          3cqfA04 A:404-512 Perfringolysin, domain 4                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...hhhhhh............ee..ee..ee..eeeeeee..........hhhhh.......eee..........ee.......eeee..........eeee...hhhhhhhhhhhhhhhhhhhh........eeeeeeee..hhhhhhhhhh.hhhhhhhhhh.hhhhhhh...eeeeeeeeeeeeeee.....hhhhhh....hhhhhhhh.......eeeeeeeeeeeeeeeeeee.....hhhhhhhhhhhh...............eeeeee.....-----.eee.hhhhhhhhhhhh..........eeeeeeee.............eeeee.......eeeeeee.....eeeeeeeeeeee.....eeeeeee......ee...eeeeeee...ee...eeeeee.......eeeeeee.......eeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cqf A  46 KNASDINTGIANLKYDSRDILAVNGDKVESFIPKESINSNGKFVVVEREKKSLTTSPVDILIIDSVVNRTYPGAVQLANKAFADNQPSLLVAKRKPLNISIDLPGMRKENTITVQNPTYGNVAGAVDDLVSTWNEKYSTTHTLPARMQYTESMVYSKSQIASALNVNAKYLDNSLNIDFNAVANGEKKVMVAAYKQIFYTVSAELPNNPSDLFDNSVTFDELTRKGVSNSAPPVMVSNVAYGRTVYVKLETTSKSKDVQAAFKALLKNNSVETSGQYKDIFEESTFTAVVLGGD-----KVVTKDFNEIRNIIKDNAELSFKNPAYPISYTSTFLKDNATAAVHNNTDYIETTTTEYSSAKMTLDHYGAYVAQFDVSWDEFTFDQNGKEVLTHKTWEGSGKDKTAHYSTVIPLPPNSKNIKIVARECTGLAWEWWRTIINEQNVPLTNEIKVSIGGTTLYPTATISH 512
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335   |   345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       
                                                                                                                                                                                                                                                                                                                               339   345

Chain B from PDB  Type:PROTEIN  Length:462
 aligned with Q81N62_BACAN | Q81N62 from UniProtKB/TrEMBL  Length:512

    Alignment length:467
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       
         Q81N62_BACAN    46 KNASDINTGIANLKYDSRDILAVNGDKVESFIPKESINSNGKFVVVEREKKSLTTSPVDILIIDSVVNRTYPGAVQLANKAFADNQPSLLVAKRKPLNISIDLPGMRKENTITVQNPTYGNVAGAVDDLVSTWNEKYSTTHTLPARMQYTESMVYSKSQIASALNVNAKYLDNSLNIDFNAVANGEKKVMVAAYKQIFYTVSAELPNNPSDLFDNSVTFDELTRKGVSNSAPPVMVSNVAYGRTVYVKLETTSKSKDVQAAFKALLKNNSVETSGQYKDIFEESTFTAVVLGGDAKEHNKVVTKDFNEIRNIIKDNAELSFKNPAYPISYTSTFLKDNATAAVHNNTDYIETTTTEYSSAKMTLDHYGAYVAQFDVSWDEFTFDQNGKEVLTHKTWEGSGKDKTAHYSTVIPLPPNSKNIKIVARECTGLAWEWWRTIINEQNVPLTNEIKVSIGGTTLYPTATISH 512
               SCOP domains d3cqfb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 3cqfB01              3cqfB02 B:67-102,B:387-403          3cqfB01 B:46-66,B:103-191,B:242-287,B:363-386 HIV-1 Reverse Transcriptase; Chain         --------------------------------------------------3cqfB01 B:46-66,B:103-191,B:242-287,B:363-386 ---------------------------------------------------------------------------3cqfB01                 3cqfB02          3cqfB04 B:404-512 Perfringolysin, domain 4                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...hhhhhh............ee..ee..ee..eeeeeee..........hhhhh.......eee..........ee.......eeee..........eeee...hhhhhhhhhhhhhhhhhhhh........eeeeeeee..hhhhhhhhhh.hhhhhhhhhh.hhhhhhh...eeeeeeeeeeeeeee.....hhhhhh....hhhhhhhh.......eeeeeeeeeeeeeeeeeee.....hhhhhhhhhhhh...............eeeeee.....-----.eee.hhhhhhhhhhhh..........eeeeeeee.............eeeee.......eeeeeee.....eeeeeeeeeeee.....eeeeeee......ee...eeeeeee...ee...eeeeee.......eeeeeee.......eeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cqf B  46 KNASDINTGIANLKYDSRDILAVNGDKVESFIPKESINSNGKFVVVEREKKSLTTSPVDILIIDSVVNRTYPGAVQLANKAFADNQPSLLVAKRKPLNISIDLPGMRKENTITVQNPTYGNVAGAVDDLVSTWNEKYSTTHTLPARMQYTESMVYSKSQIASALNVNAKYLDNSLNIDFNAVANGEKKVMVAAYKQIFYTVSAELPNNPSDLFDNSVTFDELTRKGVSNSAPPVMVSNVAYGRTVYVKLETTSKSKDVQAAFKALLKNNSVETSGQYKDIFEESTFTAVVLGGD-----KVVTKDFNEIRNIIKDNAELSFKNPAYPISYTSTFLKDNATAAVHNNTDYIETTTTEYSSAKMTLDHYGAYVAQFDVSWDEFTFDQNGKEVLTHKTWEGSGKDKTAHYSTVIPLPPNSKNIKIVARECTGLAWEWWRTIINEQNVPLTNEIKVSIGGTTLYPTATISH 512
                                    55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335   |   345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       
                                                                                                                                                                                                                                                                                                                               339   345

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Membrane and cell surface proteins and peptides (2046)

Fold: Perfringolysin (7)

Superfamily: Perfringolysin (7)

Family: Perfringolysin (5)

Protein domain: automated matches (2)

Anthrax bacillus (Bacillus anthracis) [TaxId: 1392] (1)

1a	d3cqfa_	A:
1b	d3cqfb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Carboxypeptidase Inhibitor; Chain A (10)

Homologous Superfamily: [code=3.30.1040.20, no name defined] (5)

Bacillus anthracis. Organism_taxid: 1392. (1)

1a	3cqfA02	A:67-102,A:387-403
1b	3cqfB02	B:67-102,B:387-403

Architecture: Alpha-Beta Complex (3881)

Topology: HIV-1 Reverse Transcriptase; Chain A, domain 3 (6)

Homologous Superfamily: HIV-1 Reverse Transcriptase; Chain (6)

Bacillus anthracis. Organism_taxid: 1392. (1)

2a	3cqfA01	A:46-66,A:103-191,A:242-287,A:363-386
2b	3cqfB01	B:46-66,B:103-191,B:242-287,B:363-386

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Perfringolysin, domain 4 (6)

Bacillus anthracis. Organism_taxid: 1392. (1)

3a	3cqfA04	A:404-512
3b	3cqfB04	B:404-512

(no "Pfam Domain" information available for 3CQF)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q81N62_BACAN | Q81N62)

molecular function
	GO:0015485	cholesterol binding	Interacting selectively and non-covalently with cholesterol (cholest-5-en-3-beta-ol); the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.

Asymmetric Unit
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	Cis Peptide Bonds
		Ala A:450 - His A:451	[ RasMol ]
		Ala B:450 - His B:451	[ RasMol ]

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