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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE NUCLEOTIDE-DIPHOSPHO-SUGAR TRANSFERASE (YP_389115.1) FROM DESULFOVIBRIO DESULFURICANS G20 AT 1.90 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  06 Mar 08  (Deposition) - 18 Mar 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Yp_389115. 1, Putative Nucleotide-Diphospho-Sugar Transferase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Nucleotide-Diphospho-Sugar Transferase (Yp_389115. 1) From Desulfovibrio Desulfuricans G20 At 1. 90 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE NUCLEOTIDE-DIPHOSPHO-SUGAR TRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_389115.1, DDE_2624
    Organism Scientific: DESULFOVIBRIO DESULFURICANS SUBSP. DESULFURICANS STR.
    Organism Taxid: 207559
    Strain: G20

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1IMD1Ligand/IonIMIDAZOLE
2MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:19 , TYR A:35 , ASP A:111 , HOH A:262 , HOH A:286BINDING SITE FOR RESIDUE IMD A 242

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CGX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3CGX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CGX)

(-) Exons   (0, 0)

(no "Exon" information available for 3CGX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:231
 aligned with Q30Y26_DESAG | Q30Y26 from UniProtKB/TrEMBL  Length:243

    Alignment length:231
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232 
         Q30Y26_DESAG     3 MSESCILFFVKYPEPGKVKTRLGEVVGNDKAAMLYRHFVQDMLQGLARLHADLHICYVPGDADLPEKFKAWLGPQHMFAAQQGLDLGERMKHAMQKAFDDGYDRVVLMGSDIPDYPCELVQKALNDLQHYDAAIGPAFDGGYYLIGFRKDSFCPDVFDGIRWGEADVYQPTVEKMRRARLEVLQLPDWNDVDTVWDLNVLYRTNKNSSFRRSSTYALLRENDALIRQYDID 233
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhh....eeeee.....eeeeeee.hhhhhhhhh........hhhhhhhhhhhh...eee........hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cgx A   1 mSESCILFFVKYPEPGKVKTRLGEVVGNDKAAmLYRHFVQDmLQGLARLHADLHICYVPGDADLPEKFKAWLGPQHmFAAQQGLDLGERmKHAmQKAFDDGYDRVVLmGSDIPDYPCELVQKALNDLQHYDAAIGPAFDGGYYLIGFRKDSFCPDVFDGIRWGEADVYQPTVEKmRRARLEVLQLPDWNDVDTVWDLNVLYRTNKNSSFRRSSTYALLRENDALIRQYDID 231
                            |       10        20        30  |     40 |      50        60        70      | 80        90   |   100       110       120       130       140       150       160       170    |  180       190       200       210       220       230 
                            |                              33-MSE   42-MSE                             77-MSE       90-MSE           108-MSE                                                            175-MSE                                                    
                            1-MSE                                                                                       94-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CGX)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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