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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE GLUTATHIONE S-TRANSFERASE (REUT_A1011) FROM RALSTONIA EUTROPHA JMP134 AT 2.05 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  22 Feb 08  (Deposition) - 04 Mar 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Thioredoxin Fold, Gst C-Terminal Domain-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Glutathione S-Transferase (Yp_295234. 1) From Ralstonia Eutropha Jmp134 At 2. 05 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROBABLE GST-RELATED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_295234.1, REUT_A1011
    Organism Scientific: RALSTONIA EUTROPHA
    Organism Taxid: 264198
    Strain: JMP134

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric/Biological Unit (3, 15)
No.NameCountTypeFull Name
1EDO6Ligand/Ion1,2-ETHANEDIOL
2MSE8Mod. Amino AcidSELENOMETHIONINE
3PO41Ligand/IonPHOSPHATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:116 , ASN A:118 , ARG A:122 , SER B:116 , ASN B:118 , ARG B:122BINDING SITE FOR RESIDUE PO4 A 214
2AC2SOFTWAREPHE A:7 , TRP A:33 , ILE A:34 , ARG A:211BINDING SITE FOR RESIDUE EDO A 215
3AC3SOFTWARETHR B:92 , GLU B:95BINDING SITE FOR RESIDUE EDO B 214
4AC4SOFTWARETYR B:143 , THR B:148 , PHE B:149 , ARG B:191BINDING SITE FOR RESIDUE EDO B 215
5AC5SOFTWARETYR A:143 , THR A:148 , PHE A:149 , ARG A:191BINDING SITE FOR RESIDUE EDO A 216
6AC6SOFTWAREPRO A:75 , LEU A:76 , LEU A:77 , PRO A:78 , THR A:148 , PHE A:149BINDING SITE FOR RESIDUE EDO A 217

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3CBU)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Val A:47 -Pro A:48
2Ser A:141 -Pro A:142
3Val B:47 -Pro B:48
4Ser B:141 -Pro B:142

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3CBU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3CBU)

(-) Exons   (0, 0)

(no "Exon" information available for 3CBU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:211
 aligned with Q473P3_CUPNJ | Q473P3 from UniProtKB/TrEMBL  Length:213

    Alignment length:211
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210 
         Q473P3_CUPNJ     1 MLKLCGFAASNYYNKVKLALLEKNVPFEEVLAWIGETDTTATPAGKVPYMITESGSLCESEVINEYLEAAYPQTPLLPRDPMQAGKVREIVTFLELYLELTARELYPEAFFGGKVSDNVKERQLKLLSRYVPAFAKLAKFSPYVAGDTFTLADCAAAVHLPLVSSCTKIIYGKDLLADLPVKEYLKTLSERPSVQKVNADRKANTELMLSR 211
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -3cbuA01 A:2-77 Glutaredoxin                                                 3cbuA02 A:78-211  [code=1.20.1050.10, no name defined]                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhh..eeeee.................eeee..eee.hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cbu A   1 mLKLCGFAASNYYNKVKLALLEKNVPFEEVLAWIGETDTTATPAGKVPYmITESGSLCESEVINEYLEAAYPQTPLLPRDPmQAGKVREIVTFLELYLELTARELYPEAFFGGKVSDNVKERQLKLLSRYVPAFAKLAKFSPYVAGDTFTLADCAAAVHLPLVSSCTKIIYGKDLLADLPVKEYLKTLSERPSVQKVNADRKANTELmLSR 211
                            |       10        20        30        40        50        60        70        80 |      90       100       110       120       130       140       150       160       170       180       190       200       210 
                            |                                               50-MSE                          82-MSE                                                                                                                       208-MSE
                            1-MSE                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:213
 aligned with Q473P3_CUPNJ | Q473P3 from UniProtKB/TrEMBL  Length:213

    Alignment length:213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   
         Q473P3_CUPNJ     1 MLKLCGFAASNYYNKVKLALLEKNVPFEEVLAWIGETDTTATPAGKVPYMITESGSLCESEVINEYLEAAYPQTPLLPRDPMQAGKVREIVTFLELYLELTARELYPEAFFGGKVSDNVKERQLKLLSRYVPAFAKLAKFSPYVAGDTFTLADCAAAVHLPLVSSCTKIIYGKDLLADLPVKEYLKTLSERPSVQKVNADRKANTELMLSRNK 213
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -3cbuB01 B:2-77 Glutaredoxin                                                 3cbuB02 B:78-213  [code=1.20.1050.10, no name defined]                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh...eeeee.................eee....ee.hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3cbu B   1 mLKLCGFAASNYYNKVKLALLEKNVPFEEVLAWIGETDTTATPAGKVPYmITESGSLCESEVINEYLEAAYPQTPLLPRDPmQAGKVREIVTFLELYLELTARELYPEAFFGGKVSDNVKERQLKLLSRYVPAFAKLAKFSPYVAGDTFTLADCAAAVHLPLVSSCTKIIYGKDLLADLPVKEYLKTLSERPSVQKVNADRKANTELmLSRNK 213
                            |       10        20        30        40        50        60        70        80 |      90       100       110       120       130       140       150       160       170       180       190       200       210   
                            |                                               50-MSE                          82-MSE                                                                                                                       208-MSE 
                            1-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3CBU)

(-) CATH Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3CBU)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3CBU)

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