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Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   ABC PROTEIN ARTP IN COMPLEX WITH ATP-GAMMA-S

Authors :   P. F. Thaben, V. Eckey, F. Scheffel, W. Saenger, E. Schneider, A. Vahedi

Date :   30 Jan 08 (Deposition) - 03 Feb 09 (Release) - 15 Feb 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.33

Chains :   Asym./Biol. Unit : A,B

Keywords :   Abc Domain, Atpase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. F. Thaben, V. Eckey, F. Scheffel, C. Allings, J. Behlke, W. Saenger, E. Schneider, A. Vahedi-Faridi
Crystal Structures Of The Atp-Binding Cassette (Abc) Protei Artp From Geobacillus Stearothermophilus In Complexes With Nucleotides And Nucleotide Analogs Reveal An Intermediate Semiclosed Dimer In The Post Hydrolyses State And An Asymmetry In The Dimerisation Region
To Be Published
PubMed: search

Molecule 1 - AMINO ACID ABC TRANSPORTER (ARTP)
	Chains	:	A, B
	EC Number	:	3.6.3.21
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15
	Expression System Strain	:	ROSETTA(DE3)PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ARTP
	Organism Scientific	:	GEOBACILLUS STEAROTHERMOPHILUS
	Organism Taxid	:	1422
	Strain	:	DSMZ 13240

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 4)

No.	Name	Count	Type	Full Name
1	AGS	2	Ligand/Ion	PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
2	MG	2	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:41 , AGS A:602 , HOH A:605 , HOH A:723 , ASP B:135 , HOH B:606	BINDING SITE FOR RESIDUE MG A 603
2	AC2	SOFTWARE	SER B:41 , AGS B:601 , HOH B:607 , HOH B:608 , HOH B:609	BINDING SITE FOR RESIDUE MG B 604
3	AC3	SOFTWARE	PHE A:11 , VAL A:16 , PRO A:35 , SER A:36 , GLY A:37 , SER A:38 , GLY A:39 , LYS A:40 , SER A:41 , THR A:42 , GLU A:162 , MG A:603 , HOH A:605 , HOH A:619 , HOH A:640 , HOH A:685 , HOH A:723 , HIS B:131 , HOH B:606	BINDING SITE FOR RESIDUE AGS A 602
4	AC4	SOFTWARE	HIS A:131 , PHE B:11 , VAL B:16 , PRO B:35 , SER B:36 , GLY B:37 , SER B:38 , GLY B:39 , LYS B:40 , SER B:41 , THR B:42 , GLU B:162 , MG B:604 , HOH B:607 , HOH B:609 , HOH B:627 , HOH B:631 , HOH B:667 , HOH B:692	BINDING SITE FOR RESIDUE AGS B 601

(no "SS Bond" information available for 3C4J)

(no "Cis Peptide Bond" information available for 3C4J)

(no "SAP(SNP)/Variant" information available for 3C4J)

(no "PROSITE Motif" information available for 3C4J)

(no "Exon" information available for 3C4J)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:242
 aligned with D0VWX4_GEOSE | D0VWX4 from UniProtKB/TrEMBL  Length:243

    Alignment length:242
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241  
         D0VWX4_GEOSE     2 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLSKVF 243
               SCOP domains d3c4ja_ A: automated matches                                                                                                                                                                                                                       SCOP domains
               CATH domains 3c4jA00 A:-1-240 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee..eeeeeeeeeee....eeeee.....hhhhhhhhhh......eeeeee..ee......hhhhhhh.eeee..........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhh.eeeeee..eeeeeehhhhhhhh..hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c4j A  -1 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLSKVF 240
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238

Chain B from PDB  Type:PROTEIN  Length:242
 aligned with D0VWX4_GEOSE | D0VWX4 from UniProtKB/TrEMBL  Length:243

    Alignment length:242
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241  
         D0VWX4_GEOSE     2 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLSKVF 243
               SCOP domains d3c4jb_ B: automated matches                                                                                                                                                                                                                       SCOP domains
               CATH domains 3c4jB00 B:-1-240 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee..eeeeeeeeeee....eeeee.....hhhhhhhhhh......eeeeee..ee......hhhhhhh.eeee..........hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhh.eeeeee..eeeeeehhhhhhhh..hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3c4j B  -1 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQHERTKAFLSKVF 240
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: automated matches (303)

Protein domain: automated matches (303)

Geobacillus stearothermophilus [TaxId: 1422] (8)

1a	d3c4ja_	A:
1b	d3c4jb_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)

Geobacillus stearothermophilus. Organism_taxid: 1422. Strain: dsmz 13240. (5)

1a	3c4jA00	A:-1-240
1b	3c4jB00	B:-1-240

(no "Pfam Domain" information available for 3C4J)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (D0VWX4_GEOSE | D0VWX4)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016887	ATPase activity	Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
	GO:0015424	amino acid-transporting ATPase activity	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + amino acid(out/in) = ADP + phosphate + amino acid(in/out).
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0015426	polar-amino acid-transporting ATPase activity	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + polar amino acid(out) = ADP + phosphate + polar amino acid(in).
biological process
	GO:0003333	amino acid transmembrane transport	The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore.

Asymmetric/Biological Unit
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