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(-) Description

Title :  CRYSTAL STRUCTURE OF LOLA SUPERFAMILY PROTEIN NE2245 FROM NITROSOMONAS EUROPAEA
 
Authors :  C. Chang, R. Wu, S. Clancy, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Date :  03 Jan 08  (Deposition) - 22 Jan 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Lola Superfamily, Nitrosomonas Europaea, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, R. Wu, S. Clancy, A. Joachimiak
Crystal Structure Of Lola Superfamily Protein Ne2245 From Nitrosomonas Europaea.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED LOLA SUPERFAMILY PROTEIN NE2245
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3) DERIVATIVE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 32-257
    Gene: NE2245
    Organism Scientific: NITROSOMONAS EUROPAEA ATCC 19718
    Organism Taxid: 228410
    Strain: IFO 14298

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3BUU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BUU)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:90 -Pro A:91
2Glu B:90 -Pro B:91

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BUU)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:224
 aligned with Q82SR2_NITEU | Q82SR2 from UniProtKB/TrEMBL  Length:257

    Alignment length:224
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253    
         Q82SR2_NITEU    34 AVTAQSILEKADEIRFPQDSFQVNVAIRTAAPDHAEDLYRYQVLSKGNENSIVMITEPASERGQAILMKGRDLWVFMPSVSQPIRLSLSQRLTGQVANGDIARANFTGDYHPQLLRNESIDDEDYYVLELTGIDRSVTYQKVLLWVNQSNFRPYKAEFYSVSGRLLKTSRYENFDNILGEMRPTRIIMEDALKSGEVSVLDYSDMKLRDLPDKIFTKDYLKRLE 257
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3buuA00 A:34-257 outer membrane lipoprotein receptor (LolB), chain A                                                                                                                                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh....eeeeeeeeeee..ee...eeeeeeee...eeeeeeee.......eeeee..eeeee.......eee....eee..eehhhhhh......eeeeeeeeeee..eeeeeeeeee........eeeeeee.....eeeeeee.....eeeeeeeeeeeee..eeeeeeeeeee......eeeeeeeeeee...hhhhh.hhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3buu A  34 AVTAQSILEKADEIRFPQDSFQVNVAIRTAAPDHAEDLYRYQVLSKGNENSIVmITEPASERGQAILmKGRDLWVFmPSVSQPIRLSLSQRLTGQVANGDIARANFTGDYHPQLLRNESIDDEDYYVLELTGIDRSVTYQKVLLWVNQSNFRPYKAEFYSVSGRLLKTSRYENFDNILGEmRPTRIImEDALKSGEVSVLDYSDmKLRDLPDKIFTKDYLKRLE 257
                                    43        53        63        73        83   |    93       103      |113       123       133       143       153       163       173       183       193       203       213|      223       233    |  243       253    
                                                                                87-MSE       101-MSE  110-MSE                                                                                                 214-MSE  |              238-MSE               
                                                                                                                                                                                                                     221-MSE                                


Chain B from PDB  Type:PROTEIN  Length:220
 aligned with Q82SR2_NITEU | Q82SR2 from UniProtKB/TrEMBL  Length:257

    Alignment length:220
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253
         Q82SR2_NITEU    34 AVTAQSILEKADEIRFPQDSFQVNVAIRTAAPDHAEDLYRYQVLSKGNENSIVMITEPASERGQAILMKGRDLWVFMPSVSQPIRLSLSQRLTGQVANGDIARANFTGDYHPQLLRNESIDDEDYYVLELTGIDRSVTYQKVLLWVNQSNFRPYKAEFYSVSGRLLKTSRYENFDNILGEMRPTRIIMEDALKSGEVSVLDYSDMKLRDLPDKIFTKDYL 253
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3buuB00 B:34-253 outer membrane lipoprotein receptor (LolB), chain A                                                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh....eeeeeeeeee......eeeeeeeeee...eeeeeeee.......eeeee..eeee........eee....eee..eehhhhhh......eeeeeeeeeee..eeeeeeeeee........eeeeeee.....eeeeeee.....eeeeeeeeeeeee..eeeeeeeeeee......eeeeeeeeeee...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3buu B  34 AVTAQSILEKADEIRFPQDSFQVNVAIRTAAPDHAEDLYRYQVLSKGNENSIVmITEPASERGQAILmKGRDLWVFmPSVSQPIRLSLSQRLTGQVANGDIARANFTGDYHPQLLRNESIDDEDYYVLELTGIDRSVTYQKVLLWVNQSNFRPYKAEFYSVSGRLLKTSRYENFDNILGEmRPTRIImEDALKSGEVSVLDYSDmKLRDLPDKIFTKDYL 253
                                    43        53        63        73        83   |    93       103      |113       123       133       143       153       163       173       183       193       203       213|      223       233    |  243       253
                                                                                87-MSE       101-MSE  110-MSE                                                                                                 214-MSE  |              238-MSE           
                                                                                                                                                                                                                     221-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3BUU)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BUU)

(-) Gene Ontology  (0, 0)

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