Chain A from PDB Type:PROTEIN Length:414
aligned with A5W4F4_PSEP1 | A5W4F4 from UniProtKB/TrEMBL Length:453
Alignment length:432
453
34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 314 324 334 344 354 364 374 384 394 404 414 424 434 444 |-
A5W4F4_PSEP1 25 DLEGYGAISRAMGGTSSSYYTGNAALISNPATLSFAPDGNQFELGLDVVTTDIKVHDSHGAEAKSSTRSNNRGPYVGPQLSYVAQLDDWRFGAGLFVSSGLGTEYGSKSFLSQTENGIQTSFDNSSRLIVLRAPIGFSYQATSKLTFGASVDLVWTSLNLELLLPSSQVGALTAQGNLSGGLVPSLAGFVGTGGAAHFSLSRNSTAGGAVDAVGWGGRLGLTYKLTDNTVLGAMYNFKTSVGDLEGKATLSAISGDGAVLPLDGDIRVKNFEMPASLTLGLAHQFNERWVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYAQQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRINLAISFGLRERVQTPSYLAGTEMLRQSHSQINAVVSYSKNF--- -
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains 3bs0A00 A:5-436 Outer membrane protein transport protein (OMPP1/Fad L/TodX) CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .....hhhhhhh.........hhhhhh.hhhhhhhh...eeeeeeeeeeeeeeeee.....eeee..-----...eeeeeeeeeee..eeeeeeeeeeeeeeee....hhhhh...........eeeeeeee..eeeee.......eeeee..eeeeeeeeeeeehhhhhhhhhh..ee.hhhhhhhhhhh...eeeeee.........eeeeee.eeeeeeee....eeeeeeee...ee..eeeeeeeeee.....eeeeeeeeee.......eeeeeeeee....eeeeeeeeee.hhhh..-...eeee..eeeee........eeeeeeeeeee....eeeeeeeee..------...........eeeeeeeeee....eeeeeeeeeeeeeeee.------....eeeeeeeeeeeeeeeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bs0 A 5 DLEGYGAISRAMGGTSSSYYTGNAALISNPATLSFAPDGNQFELGLDVVTTDIKVHDSHGAEAKSST-----GPYVGPQLSYVAQLDDWRFGAGLFVSSGLGTEYGSKSFLSQTENGIQTSFDNSSRLIVLRAPIGFSYQATSKLTFGASVDLVWTSLNLELLLPSSQVGALTAQGNLSGGLVPSLAGFVGTGGAAHFSLSRNSTAGGAVDAVGWGGRLGLTYKLTDNTVLGAMYNFKTSVGDLEGKATLSAISGDGAVLPLDGDIRVKNFEMPASLTLGLAHQFNERWVVAADIKRAYWGDVMD-MNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYAQ------LILPVIPAYLKRHVTFGGEYDFDKDSRINLAISFGLRERVQT------TEMLRQSHSQINAVVSYSKNFHHH 436
14 24 34 44 54 64 | - | 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 | |314 324 334 344 354 | -| 374 384 394 404 | 414 424 434
71 77 309 | 358 365 406 413
311
Chain A from PDB Type:PROTEIN Length:414
aligned with Q51971_PSEPU | Q51971 from UniProtKB/TrEMBL Length:453
Alignment length:432
453
34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 314 324 334 344 354 364 374 384 394 404 414 424 434 444 |-
Q51971_PSEPU 25 DLEGYGAISRAMGGTSSSYYTGNAALISNPATLSFAPDGNQFELGLDVVTTDIKVHDSHGAEPKSSTRSNNRAPYVGPQLSYVAQLDDWRFGAGLFVSSGLGTEYGSKSFLSQTENGIQTSFDNSSRLIVLRAPIGFSYQATSKLTFGASVDLVWTSLNLELLLPSSQVGALTAQGNLSGGLVPSLAGFVGTGGAAHFSLSRNSTAGGAVDAVGWGGRLGLTYKLTDNTVLGAMYNFKTSVGDLEGKATLSAISGDGAVLPLDGDIRVKNFEMPASLTLGLAHQFNERWVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYAQQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRINLAISFGLRERVQTPSYLAGTEMLRQSHSQINAVVSYSKNF--- -
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains 3bs0A00 A:5-436 Outer membrane protein transport protein (OMPP1/Fad L/TodX) CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .....hhhhhhh.........hhhhhh.hhhhhhhh...eeeeeeeeeeeeeeeee.....eeee..-----...eeeeeeeeeee..eeeeeeeeeeeeeeee....hhhhh...........eeeeeeee..eeeee.......eeeee..eeeeeeeeeeeehhhhhhhhhh..ee.hhhhhhhhhhh...eeeeee.........eeeeee.eeeeeeee....eeeeeeee...ee..eeeeeeeeee.....eeeeeeeeee.......eeeeeeeee....eeeeeeeeee.hhhh..-...eeee..eeeee........eeeeeeeeeee....eeeeeeeee..------...........eeeeeeeeee....eeeeeeeeeeeeeeee.------....eeeeeeeeeeeeeeeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bs0 A 5 DLEGYGAISRAMGGTSSSYYTGNAALISNPATLSFAPDGNQFELGLDVVTTDIKVHDSHGAEAKSST-----GPYVGPQLSYVAQLDDWRFGAGLFVSSGLGTEYGSKSFLSQTENGIQTSFDNSSRLIVLRAPIGFSYQATSKLTFGASVDLVWTSLNLELLLPSSQVGALTAQGNLSGGLVPSLAGFVGTGGAAHFSLSRNSTAGGAVDAVGWGGRLGLTYKLTDNTVLGAMYNFKTSVGDLEGKATLSAISGDGAVLPLDGDIRVKNFEMPASLTLGLAHQFNERWVVAADIKRAYWGDVMD-MNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYAQ------LILPVIPAYLKRHVTFGGEYDFDKDSRINLAISFGLRERVQT------TEMLRQSHSQINAVVSYSKNFHHH 436
14 24 34 44 54 64 | - | 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 | |314 324 334 344 354 | -| 374 384 394 404 | 414 424 434
71 77 309 | 358 365 406 413
311
Chain B from PDB Type:PROTEIN Length:414
aligned with A5W4F4_PSEP1 | A5W4F4 from UniProtKB/TrEMBL Length:453
Alignment length:432
453
34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 314 324 334 344 354 364 374 384 394 404 414 424 434 444 |-
A5W4F4_PSEP1 25 DLEGYGAISRAMGGTSSSYYTGNAALISNPATLSFAPDGNQFELGLDVVTTDIKVHDSHGAEAKSSTRSNNRGPYVGPQLSYVAQLDDWRFGAGLFVSSGLGTEYGSKSFLSQTENGIQTSFDNSSRLIVLRAPIGFSYQATSKLTFGASVDLVWTSLNLELLLPSSQVGALTAQGNLSGGLVPSLAGFVGTGGAAHFSLSRNSTAGGAVDAVGWGGRLGLTYKLTDNTVLGAMYNFKTSVGDLEGKATLSAISGDGAVLPLDGDIRVKNFEMPASLTLGLAHQFNERWVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYAQQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRINLAISFGLRERVQTPSYLAGTEMLRQSHSQINAVVSYSKNF--- -
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains 3bs0B00 B:5-436 Outer membrane protein transport protein (OMPP1/Fad L/TodX) CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .....hhhhhhh.........hhhhhh.hhhhhhhh...eeeeeeeeeeeeeeeee.....eeee..-----...eeeeeeeeeee..eeeeeeeeeeeeeeee....hhhhh...........eeeeeeee..eeeee.......eeeee..eeeeeeeeeeeehhhhhhhhhh..ee.hhhhhhhhhhh...eeeeee.........eeeeee.eeeeeeee....eeeeeeee...ee..eeeeeeeeee.....eeeeeeeeee.......eeeeeeeee....eeeeeeeeee.hhhh..-...eeee..eeeee........eeeeeeeeeee....eeeeeeeee..------...........eeeeeeeeee....eeeeeeeeeeeeeeee.------....eeeeeeeeeeeeeeeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bs0 B 5 DLEGYGAISRAMGGTSSSYYTGNAALISNPATLSFAPDGNQFELGLDVVTTDIKVHDSHGAEAKSST-----GPYVGPQLSYVAQLDDWRFGAGLFVSSGLGTEYGSKSFLSQTENGIQTSFDNSSRLIVLRAPIGFSYQATSKLTFGASVDLVWTSLNLELLLPSSQVGALTAQGNLSGGLVPSLAGFVGTGGAAHFSLSRNSTAGGAVDAVGWGGRLGLTYKLTDNTVLGAMYNFKTSVGDLEGKATLSAISGDGAVLPLDGDIRVKNFEMPASLTLGLAHQFNERWVVAADIKRAYWGDVMD-MNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYAQ------LILPVIPAYLKRHVTFGGEYDFDKDSRINLAISFGLRERVQT------TEMLRQSHSQINAVVSYSKNFHHH 436
14 24 34 44 54 64 | - | 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 | |314 324 334 344 354 | -| 374 384 394 404 | 414 424 434
71 77 309 | 358 365 406 413
311
Chain B from PDB Type:PROTEIN Length:414
aligned with Q51971_PSEPU | Q51971 from UniProtKB/TrEMBL Length:453
Alignment length:432
453
34 44 54 64 74 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 314 324 334 344 354 364 374 384 394 404 414 424 434 444 |-
Q51971_PSEPU 25 DLEGYGAISRAMGGTSSSYYTGNAALISNPATLSFAPDGNQFELGLDVVTTDIKVHDSHGAEPKSSTRSNNRAPYVGPQLSYVAQLDDWRFGAGLFVSSGLGTEYGSKSFLSQTENGIQTSFDNSSRLIVLRAPIGFSYQATSKLTFGASVDLVWTSLNLELLLPSSQVGALTAQGNLSGGLVPSLAGFVGTGGAAHFSLSRNSTAGGAVDAVGWGGRLGLTYKLTDNTVLGAMYNFKTSVGDLEGKATLSAISGDGAVLPLDGDIRVKNFEMPASLTLGLAHQFNERWVVAADIKRAYWGDVMDSMNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYAQQALDSELILPVIPAYLKRHVTFGGEYDFDKDSRINLAISFGLRERVQTPSYLAGTEMLRQSHSQINAVVSYSKNF--- -
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains 3bs0B00 B:5-436 Outer membrane protein transport protein (OMPP1/Fad L/TodX) CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .....hhhhhhh.........hhhhhh.hhhhhhhh...eeeeeeeeeeeeeeeee.....eeee..-----...eeeeeeeeeee..eeeeeeeeeeeeeeee....hhhhh...........eeeeeeee..eeeee.......eeeee..eeeeeeeeeeeehhhhhhhhhh..ee.hhhhhhhhhhh...eeeeee.........eeeeee.eeeeeeee....eeeeeeee...ee..eeeeeeeeee.....eeeeeeeeee.......eeeeeeeee....eeeeeeeeee.hhhh..-...eeee..eeeee........eeeeeeeeeee....eeeeeeeee..------...........eeeeeeeeee....eeeeeeeeeeeeeeee.------....eeeeeeeeeeeeeeeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
3bs0 B 5 DLEGYGAISRAMGGTSSSYYTGNAALISNPATLSFAPDGNQFELGLDVVTTDIKVHDSHGAEAKSST-----GPYVGPQLSYVAQLDDWRFGAGLFVSSGLGTEYGSKSFLSQTENGIQTSFDNSSRLIVLRAPIGFSYQATSKLTFGASVDLVWTSLNLELLLPSSQVGALTAQGNLSGGLVPSLAGFVGTGGAAHFSLSRNSTAGGAVDAVGWGGRLGLTYKLTDNTVLGAMYNFKTSVGDLEGKATLSAISGDGAVLPLDGDIRVKNFEMPASLTLGLAHQFNERWVVAADIKRAYWGDVMD-MNVAFISQLGGIDVALPHRYQDITVASIGTAYKYNNDLTLRAGYSYAQ------LILPVIPAYLKRHVTFGGEYDFDKDSRINLAISFGLRERVQT------TEMLRQSHSQINAVVSYSKNFHHH 436
14 24 34 44 54 64 | - | 84 94 104 114 124 134 144 154 164 174 184 194 204 214 224 234 244 254 264 274 284 294 304 | |314 324 334 344 354 | -| 374 384 394 404 | 414 424 434
71 77 309 | 358 365 406 413
311
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |