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(-) Description

Title :  CRYSTAL STRUCTURE OF PREDICTED NUCLEOTIDE-BINDING PROTEIN FROM IDIOMARINA BALTICA OS145
 
Authors :  Y. Patskovsky, R. Toro, A. J. Meyer, M. Dickey, M. Eberle, J. Koss, C. Gro S. R. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx R Center For Structural Genomics (Nysgxrc)
Date :  19 Dec 07  (Deposition) - 01 Jan 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Toro, A. J. Meyer, M. Dickey, M. Eberle, J. Koss, C. Groshong, S. R. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Predicted Nucleotide-Binding Protein From Idiomarina Baltica.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PREDICTED ROSSMANN FOLD NUCLEOTIDE-BINDING DOMAIN- CONTAINING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: BC-PSGX3(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Gene: OS145_13019
    Organism Scientific: IDIOMARINA BALTICA
    Organism Taxid: 314276
    Strain: OS145

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric Unit (2, 9)
No.NameCountTypeFull Name
1GOL7Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 18)
No.NameCountTypeFull Name
1GOL14Ligand/IonGLYCEROL
2SO44Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY B:152 , HIS B:153 , GLU B:219 , GLY B:254 , GLY B:256 , THR B:257 , HOH B:510 , HOH B:514 , HOH B:692 , HOH B:722BINDING SITE FOR RESIDUE SO4 B 460
2AC2SOFTWAREGLY A:152 , HIS A:153 , GLU A:219 , GLY A:254 , ALA A:255 , GLY A:256 , THR A:257 , HOH A:489 , HOH A:511 , HOH A:619 , HOH A:630BINDING SITE FOR RESIDUE SO4 A 460
3AC3SOFTWAREGLN A:16 , LEU A:17 , ARG A:67 , HOH A:681 , HIS B:126 , TRP B:347BINDING SITE FOR RESIDUE GOL A 461
4AC4SOFTWAREASP A:103 , ILE A:104 , THR A:107 , ILE A:230 , LEU A:231 , PRO A:232 , HOH A:487 , HOH A:646BINDING SITE FOR RESIDUE GOL A 462
5AC5SOFTWARESER A:287 , SER A:288 , ASP A:290 , TYR A:291 , HOH A:644BINDING SITE FOR RESIDUE GOL A 463
6AC6SOFTWARESER B:10 , LEU B:14 , LEU B:101 , ARG B:102 , LEU B:105 , HOH B:694 , HOH B:748BINDING SITE FOR RESIDUE GOL B 461
7AC7SOFTWAREHIS A:126 , TRP A:347 , SER B:15 , GLN B:16 , LEU B:17BINDING SITE FOR RESIDUE GOL B 462
8AC8SOFTWAREASN A:407 , HOH A:760 , ALA B:24 , SER B:25 , SER B:26BINDING SITE FOR RESIDUE GOL B 463
9AC9SOFTWAREILE B:234 , ARG B:237 , GLY B:256 , GLU B:259 , GLU B:260 , HOH B:527 , HOH B:565BINDING SITE FOR RESIDUE GOL B 464

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BQ9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BQ9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BQ9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BQ9)

(-) Exons   (0, 0)

(no "Exon" information available for 3BQ9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:446
 aligned with A3WM10_9GAMM | A3WM10 from UniProtKB/TrEMBL  Length:451

    Alignment length:450
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450
         A3WM10_9GAMM     1 MKASISPQGSMSLLSQLEIERLKASSNSQLYKLFRNCCLAVLNAGSHTDSSADIYDSYKDFEVNIIRRERGIKLELIEPPEEAFVDGEVIVGIRELLESVLRDILFTGERYSETDLEHADSATLTHVVFDILRNARTLRPQEEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQHMHAGMAAVKQYRRDSGDAYYFNWTLKINEEFQRPFSPTHENVAALNLHPDQPKERLAADLRRAFSAIVAGNVKDEGIRQIRKNGVFTIHGEQSLMKRLDELLRAFVEQGRMKLPGSVYNPCYKVIT 450
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3bq9A01 A:1-114 MoCo carrier protein-like                                                                         3bq9A02 A:115-448  [code=3.40.50.450, no name defined]                                                                                                                                                                                                                                                                                        -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..----............eeeeeee..eeeeeee..hhh.ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee.....hhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhh......eeeee...............eeee..hhhhhhhhhhhhh.eeee...hhhhhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhh..hhhhhheeee.hhhhhhhhhhhhhhhhhhhhhhh............hhhhh.....hhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhh.............eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bq9 A   1 SLASISPQGSMSLLSQLEIERLKASSNSQLYKLFRNCCLAVLNAG----SSADIYDSYKDFEVNIIRRERGIKLELIEPPEEAFVDGEVIVGIRELLESVLRDILFTGERYSETDLEHADSATLTHVVFDILRNARTLRPQEEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQHMHAGMAAVKQYRRDSGDAYYFNWTLKINEEFQRPFSPTHENVAALNLHPDQPKERLAADLRRAFSAIVAGNVKDEGIRQIRKNGVFTIHGEQSLMKRLDELLRAFVEQGRMKLPGSVYNPCYKVIT 450
                                    10        20        30        40    |   50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450
                                                                       45   50                                                                                                                                                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:446
 aligned with A3WM10_9GAMM | A3WM10 from UniProtKB/TrEMBL  Length:451

    Alignment length:450
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450
         A3WM10_9GAMM     1 MKASISPQGSMSLLSQLEIERLKASSNSQLYKLFRNCCLAVLNAGSHTDSSADIYDSYKDFEVNIIRRERGIKLELIEPPEEAFVDGEVIVGIRELLESVLRDILFTGERYSETDLEHADSATLTHVVFDILRNARTLRPQEEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQHMHAGMAAVKQYRRDSGDAYYFNWTLKINEEFQRPFSPTHENVAALNLHPDQPKERLAADLRRAFSAIVAGNVKDEGIRQIRKNGVFTIHGEQSLMKRLDELLRAFVEQGRMKLPGSVYNPCYKVIT 450
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3bq9B01 B:1-114 MoCo carrier protein-like                                                                         3bq9B02 B:115-448  [code=3.40.50.450, no name defined]                                                                                                                                                                                                                                                                                        -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..----...hhhhhh...eeeeeee..eeeeeee..hhh.ee..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeee.....hhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhh......eeeee...............eeee..hhhhhhhhhhhhh.eeee...hhhhhhhhhhhhhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhhhh............hhhhhh....hhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee..hhhhhhhhhhhhhhhhhh.............eee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3bq9 B   1 SLASISPQGSMSLLSQLEIERLKASSNSQLYKLFRNCCLAVLNAG----SSADIYDSYKDFEVNIIRRERGIKLELIEPPEEAFVDGEVIVGIRELLESVLRDILFTGERYSETDLEHADSATLTHVVFDILRNARTLRPQEEPNMVVCWGGHSINEIEYKYTKDVGYHIGLRGLNICTGCGPGAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCAHGIVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQHMHAGMAAVKQYRRDSGDAYYFNWTLKINEEFQRPFSPTHENVAALNLHPDQPKERLAADLRRAFSAIVAGNVKDEGIRQIRKNGVFTIHGEQSLMKRLDELLRAFVEQGRMKLPGSVYNPCYKVIT 450
                                    10        20        30        40    |   50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450
                                                                       45   50
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3BQ9)

(-) CATH Domains  (2, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BQ9)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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