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(-) Description

Title :  CRYSTAL STRUCTURE OF UPF0291 PROTEIN YNZC FROM BACILLUS SUBTILIS AT RESOLUTION 2.0 A. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR384
 
Authors :  A. P. Kuzin, M. Su, J. Seetharaman, H. Janjua, K. Cunningham, M. Maglaqui, L. A. Owens, L. Zhao, R. Xiao, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  28 Nov 07  (Deposition) - 11 Dec 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  A,B,C  (1x)
Keywords :  X-Ray Structure, Nesg, Sr384, O31818, Upf0291 Protein Ynzc, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Cytoplasm, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Kuzin, M. Su, J. Seetharaman, H. Janjua, K. Cunningham, M. Maglaqui, L. A. Owens, L. Zhao, R. Xiao, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Upf0291 Protein Ynzc From Bacillus Subtilis At The Resolution 2. 0 A.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UPF0291 PROTEIN YNZC
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 1-52
    Gene: YNZC, BSU17880
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Strain: 168

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C
Biological Unit 4 (1x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3BHP)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3BHP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3BHP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3BHP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3BHP)

(-) Exons   (0, 0)

(no "Exon" information available for 3BHP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:52
 aligned with YNZC_BACSU | O31818 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:52
                                    10        20        30        40        50  
            YNZC_BACSU    1 MISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKNTLKSV 52
               SCOP domains d3bhpa_ A: automated matches                         SCOP domains
               CATH domains -3bhpA00 A:2-52 Helix hairpin bin                    CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                  3bhp A  1 mISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSmKNTLKSV 52
                            |       10        20        30        40    |   50  
                            |                                          45-MSE   
                            1-MSE                                               


Chain B from PDB  Type:PROTEIN  Length:48
 aligned with YNZC_BACSU | O31818 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:48
                                    10        20        30        40        
            YNZC_BACSU    1 MISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKNT 48
               SCOP domains d3bhpb_ B: automated matches                     SCOP domains
               CATH domains -3bhpB00 B:2-48 Helix hairpin bin                CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------ Transcript
                  3bhp B  1 mISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSmKNT 48
                            |       10        20        30        40    |   
                            1-MSE                                      45-MSE


Chain C from PDB  Type:PROTEIN  Length:54
 aligned with YNZC_BACSU | O31818 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:68
                                    10        20        30        40        50        60        
            YNZC_BACSU    1 MISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKNTLKSVKIIDPEGNDVTPEKLK 68
               SCOP domains d3bhpc_ C: automated matches                                         SCOP domains
               CATH domains -3bhpC00 C:2-54 Helix hairpin bin                                    CATH domains
               Pfam domains -------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.....--------------.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  3bhp C  1 mISNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSmKNTLKSV--------------LE 54
                            |       10        20        30        40    |   50 |       -      | 
                            |                                          45-MSE 52             53 
                            1-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3BHP)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (YNZC_BACSU | O31818)
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        YNZC_BACSU | O31818: 2hep 2jvd

(-) Related Entries Specified in the PDB File

2hep NMR STRUCTURE (FRAGMENT 1-42)
2jvd NMR STRUCTURE (FRAGMENT 1-48)