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(-) Description

Title :  CRYSTAL STRUCTURE OF AN UNCHARACTERIZED CONSERVED PROTEIN FROM LISTERIA INNOCUA
 
Authors :  B. Nocek, E. Duggan, L. Freeman, A. Joachimiak, Midwest Center For S Genomics (Mcsg)
Date :  23 Oct 07  (Deposition) - 13 Nov 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Big 860. 1, Structural Genomics, Mcsg, Sad, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, E. Duggan, L. Freeman, A. Joachimiak
Crystal Structure Of An Uncharacterized Conserved Protein From Listeria Innocua.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LIN2189 PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LIN2189
    Organism Scientific: LISTERIA INNOCUA CLIP11262
    Organism Taxid: 272626
    Strain: CLIP11262 / SEROVAR 6A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric/Biological Unit (2, 11)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE9Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:84 , THR A:102 , PHE A:140 , LYS A:182 , HOH A:1121BINDING SITE FOR RESIDUE GOL A 1001
2AC2SOFTWARELYS A:5 , LYS A:61 , LYS A:64 , MSE A:65 , ASP A:75 , HOH A:1008BINDING SITE FOR RESIDUE GOL A 1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3B49)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3B49)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3B49)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3B49)

(-) Exons   (0, 0)

(no "Exon" information available for 3B49)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:204
 aligned with Q929T5_LISIN | Q929T5 from UniProtKB/TrEMBL  Length:208

    Alignment length:204
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204    
         Q929T5_LISIN     5 KIDFKKEEKKFYAPKRKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETRLDGYSDFVVPPLEGFWWSEGKFDLKDRDAWLWTSILRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFSEEVHTVAEMHQFMETEGLRNDTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS 208
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3b49A00 A:5-208 Multidrug-efflux Transporter 1 Regulator Bmrr; Chain                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhh.....eeeeeeeeeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh...............eeeeee.......hhh.eeeeeeeee....hhhhhhhhhhhhhhhh........eeeeeeeeeeeeeeee.hhhhhhhhhhhhhhhhhhhh..........eeeee.......hhhh.eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3b49 A   5 KIDFKKEEKKFYAPKRKPERIFVPEmNFLmVDGKGDPDGEEYQKAVQSLYAIAYTIKmSKmGETRLDGYSDFVVPPLEGFWWSEGKFDLKDRDAWLWTSILRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQmmHVGPFSEEVHTVAEmHQFmETEGLRNDTGAIRKHHEIYLSDPRKANPEKmKTILRLPVS 208
                                    14        24     |  34        44        54       |64|       74        84        94       104       114       124       134       144   ||  154       164   |   174       184       194    |  204    
                                                    30-MSE                          62-MSE                                                                               148-MSE         164-MSE                            199-MSE     
                                                        34-MSE                         65-MSE                                                                             149-MSE            168-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3B49)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3B49)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3B49)

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