Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF BURKHOLDERIA THAILANDENSIS NUCLEOSIDE KINASE (BTHNK) IN COMPLEX WITH AMP-MG-AMP
 
Authors :  Y. Yasutake, H. Ota, E. Hino, S. Sakasegawa, T. Tamura
Date :  05 Jul 11  (Deposition) - 02 Nov 11  (Release) - 18 Apr 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,E  (1x)
Biol. Unit 3:  C,F  (1x)
Keywords :  Rossmann Fold, Kinase, Atp Binding, Mg Binding, Nucleoside Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Yasutake, H. Ota, E. Hino, S. Sakasegawa, T. Tamura
Structures Of Burkholderia Thailandensis Nucleoside Kinase: Implications For The Catalytic Mechanism And Nucleoside Selectivity
Acta Crystallogr. , Sect. D V. 67 945 2011
PubMed-ID: 22101821  |  Reference-DOI: 10.1107/S0907444911038777

(-) Compounds

Molecule 1 - RIBOKINASE, PUTATIVE
    Chains: A, B, C, D, E, F
    EC Number: 2.7.1.143
    Engineered: YES
    Expression System: RHODOCOCCUS ERYTHROPOLIS
    Expression System Plasmid: PTIP-QC2
    Expression System Strain: L88
    Expression System Taxid: 1833
    Expression System Vector Type: PLASMID
    Gene: BTH_I1158
    Organism Scientific: BURKHOLDERIA THAILANDENSIS
    Organism Taxid: 271848
    Strain: E264
    Synonym: NUCLEOSIDE KINASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A  D  
Biological Unit 2 (1x):  B  E 
Biological Unit 3 (1x):   C  F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 19)

Asymmetric Unit (2, 19)
No.NameCountTypeFull Name
1AMP12Ligand/IonADENOSINE MONOPHOSPHATE
2MG7Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1AMP4Ligand/IonADENOSINE MONOPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:8 , ALA A:10 , ASP A:12 , GLY A:48 , CYS A:49 , ASN A:52 , GLN A:113 , PHE A:117 , MET A:122 , PRO A:143 , GLN A:169 , GLY A:250 , ASP A:253 , HOH A:313 , HOH A:315 , HOH A:317 , HOH A:322 , HOH A:348 , HOH A:409 , MG A:503 , SER D:36BINDING SITE FOR RESIDUE AMP A 501
02AC2SOFTWAREASN A:111 , THR A:220 , ARG A:221 , GLY A:222 , GLU A:223 , GLY A:225 , VAL A:240 , GLY A:252 , PHE A:255 , SER A:277 , GLY A:280 , ILE A:284 , HOH A:325 , HOH A:483 , HOH A:587 , HOH A:763 , HOH A:780 , HIS D:31BINDING SITE FOR RESIDUE AMP A 502
03AC3SOFTWAREHOH A:313 , HOH A:314 , HOH A:315 , HOH A:316 , HOH A:317 , AMP A:501BINDING SITE FOR RESIDUE MG A 503
04AC4SOFTWARESER B:8 , ALA B:10 , ASP B:12 , GLY B:48 , CYS B:49 , ASN B:52 , GLN B:113 , PHE B:117 , MET B:122 , PRO B:143 , GLN B:169 , GLY B:250 , ASP B:253 , HOH B:314 , HOH B:315 , HOH B:316 , HOH B:317 , HOH B:319 , HOH B:361 , MG B:503 , HOH B:868 , SER E:36BINDING SITE FOR RESIDUE AMP B 501
05AC5SOFTWAREASN B:111 , THR B:220 , ARG B:221 , GLY B:222 , GLU B:223 , GLY B:225 , VAL B:240 , CYS B:251 , GLY B:252 , SER B:277 , GLY B:280 , ILE B:284 , HOH B:318 , HOH B:321 , HOH B:325 , HOH B:364 , HOH B:638 , HOH B:751 , HIS E:31BINDING SITE FOR RESIDUE AMP B 502
06AC6SOFTWAREHOH B:313 , HOH B:314 , HOH B:315 , HOH B:316 , HOH B:317 , AMP B:501BINDING SITE FOR RESIDUE MG B 503
07AC7SOFTWARESER C:8 , ALA C:10 , ASP C:12 , GLY C:47 , GLY C:48 , CYS C:49 , ASN C:52 , GLN C:113 , PHE C:117 , MET C:122 , PRO C:143 , GLN C:169 , GLY C:250 , ASP C:253 , HOH C:313 , HOH C:315 , HOH C:317 , HOH C:354 , MG C:503 , HOH C:697 , SER F:36BINDING SITE FOR RESIDUE AMP C 501
08AC8SOFTWAREASN C:111 , THR C:220 , ARG C:221 , GLY C:222 , GLY C:225 , VAL C:240 , CYS C:251 , GLY C:252 , PHE C:255 , SER C:277 , GLY C:280 , ILE C:284 , HOH C:318 , HOH C:350 , HOH C:421 , HOH C:846 , HIS F:31BINDING SITE FOR RESIDUE AMP C 502
09AC9SOFTWAREHOH C:313 , HOH C:314 , HOH C:315 , HOH C:316 , HOH C:317 , AMP C:501BINDING SITE FOR RESIDUE MG C 503
10BC1SOFTWARESER A:36 , SER D:8 , ALA D:10 , ASP D:12 , GLY D:47 , GLY D:48 , CYS D:49 , ASN D:52 , GLN D:113 , PHE D:117 , GLN D:169 , GLY D:250 , ASP D:253 , HOH D:316 , HOH D:317 , HOH D:318 , MG D:503 , HOH D:605 , HOH D:951BINDING SITE FOR RESIDUE AMP D 501
11BC2SOFTWAREHIS A:31 , ASN D:111 , THR D:220 , GLY D:222 , GLY D:225 , VAL D:240 , CYS D:251 , GLY D:252 , PHE D:255 , SER D:277 , GLY D:280 , ILE D:284 , HOH D:321 , HOH D:332 , HOH D:463 , HOH D:578 , HOH D:665 , HOH D:768BINDING SITE FOR RESIDUE AMP D 502
12BC3SOFTWAREHOH D:314 , HOH D:316 , HOH D:317 , HOH D:318 , AMP D:501 , HOH D:951BINDING SITE FOR RESIDUE MG D 503
13BC4SOFTWAREGLU D:184 , ARG D:213 , HOH D:1082 , HOH D:1083 , HOH D:1085 , HOH D:1086BINDING SITE FOR RESIDUE MG D 313
14BC5SOFTWARESER B:36 , SER E:8 , ALA E:10 , ASP E:12 , GLY E:47 , GLY E:48 , CYS E:49 , ASN E:52 , GLN E:113 , PHE E:117 , MET E:122 , PRO E:143 , GLN E:169 , GLY E:250 , ASP E:253 , HOH E:318 , HOH E:329 , HOH E:353 , MG E:503BINDING SITE FOR RESIDUE AMP E 501
15BC6SOFTWAREHIS B:31 , ASN E:111 , THR E:220 , ARG E:221 , GLY E:222 , GLU E:223 , GLY E:225 , VAL E:240 , SER E:277 , GLY E:280 , ILE E:284 , HOH E:322 , HOH E:324 , HOH E:331 , HOH E:332 , HOH E:333 , HOH E:376 , HOH E:392BINDING SITE FOR RESIDUE AMP E 502
16BC7SOFTWAREGLN E:169 , HOH E:314 , HOH E:315 , HOH E:318 , HOH E:319 , HOH E:320 , AMP E:501BINDING SITE FOR RESIDUE MG E 503
17BC8SOFTWARESER C:36 , SER F:8 , ASP F:12 , GLY F:48 , CYS F:49 , ASN F:52 , GLN F:113 , PHE F:117 , MET F:122 , PRO F:143 , GLN F:169 , GLY F:250 , ASP F:253 , HOH F:313 , HOH F:315 , HOH F:317 , HOH F:318 , HOH F:319 , HOH F:328 , HOH F:381 , MG F:503BINDING SITE FOR RESIDUE AMP F 501
18BC9SOFTWAREHIS C:31 , ASN F:111 , THR F:220 , GLY F:222 , GLU F:223 , GLY F:225 , VAL F:240 , GLY F:252 , SER F:277 , GLY F:280 , HOH F:322 , HOH F:329 , HOH F:352 , HOH F:447 , HOH F:761 , HOH F:876 , HOH F:969BINDING SITE FOR RESIDUE AMP F 502
19CC1SOFTWAREHOH F:313 , HOH F:315 , HOH F:316 , HOH F:317 , HOH F:318 , AMP F:501BINDING SITE FOR RESIDUE MG F 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3B1R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3B1R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3B1R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3B1R)

(-) Exons   (0, 0)

(no "Exon" information available for 3B1R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:310
 aligned with Q2SZE4_BURTA | Q2SZE4 from UniProtKB/TrEMBL  Length:312

    Alignment length:310
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
         Q2SZE4_BURTA     2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETAFGYRP 311
               SCOP domains d3b1ra_ A: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeeeeee...hhhhhh.........eeee......eeehhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhh.eeeeeeee.....eeeeeee......eeeeehhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhhh.hhhhhhh...eeeee.hhh.eeee....eeee............hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b1r A   2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETAFGYRP 311
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311


Chain B from PDB  Type:PROTEIN  Length:310
 aligned with Q2SZE4_BURTA | Q2SZE4 from UniProtKB/TrEMBL  Length:312

    Alignment length:310
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
         Q2SZE4_BURTA     2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETAFGYRP 311
               SCOP domains d3b1rb_ B: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeeeeee...hhhhhh.........eeee......eeehhhhhhhhhhhhhh..eeeeeeee...hhhhhhhhhhhh....eeeee.....eeeeeee......eeeeehhhhhhhhhh.........eeee...hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhhh.hhhhhhh...eeeee.hhh.eeeee..eeeee............hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b1r B   2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETAFGYRP 311
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311


Chain C from PDB  Type:PROTEIN  Length:310
 aligned with Q2SZE4_BURTA | Q2SZE4 from UniProtKB/TrEMBL  Length:312

    Alignment length:310
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
         Q2SZE4_BURTA     2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETAFGYRP 311
               SCOP domains d3b1rc_ C: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeeeeee...hhhhhh.........eeee.....eeeehhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhh.eeeeeeee.....eeeeeee......eeeeehhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhhh.hhhhhhh...eeeee.hhh.eeee....eeee............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b1r C   2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETAFGYRP 311
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311


Chain D from PDB  Type:PROTEIN  Length:310
 aligned with Q2SZE4_BURTA | Q2SZE4 from UniProtKB/TrEMBL  Length:312

    Alignment length:310
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
         Q2SZE4_BURTA     2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETAFGYRP 311
               SCOP domains d3b1rd_ D: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeeeeee...hhhhh..........eeee......eeehhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhh.eeeeeeee.....eeeeeee......eeeeehhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhhh.hhhhhhhh..eeeee.hhh.eeeee..eeeee............hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b1r D   2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETAFGYRP 311
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311


Chain E from PDB  Type:PROTEIN  Length:310
 aligned with Q2SZE4_BURTA | Q2SZE4 from UniProtKB/TrEMBL  Length:312

    Alignment length:310
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
         Q2SZE4_BURTA     2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETAFGYRP 311
               SCOP domains d3b1re_ E: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeeeeeee..hhhhhh.........eeee......eeehhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhh.....eeee.....eeeeeeee.....eeeeehhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhhh.....hhhhh.eeeee.hhh.eeeee..eeeee............hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b1r E   2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETAFGYRP 311
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311


Chain F from PDB  Type:PROTEIN  Length:310
 aligned with Q2SZE4_BURTA | Q2SZE4 from UniProtKB/TrEMBL  Length:312

    Alignment length:310
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
         Q2SZE4_BURTA     2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETAFGYRP 311
               SCOP domains d3b1rf_ F: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee...eeeeeee...hhhhhh.........eeee......eeehhhhhhhhhhhhhh..eeeeeeee...hhhhhhhhhhhh.eeeeeeee.....eeeeeee......eeeeehhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhhh.hhhhhhh...eeeee.hhh.eeeee..eeeee............hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3b1r F   2 ATLICGSIAYDNIMTFEGRFREHILPDQVHLINLSFLVPTMRREFGGCAGNIAYALNLLGGDARMMGTLGAVDAQPYLDRMDALGLSREYVRVLPDTYSAQAMITTDLDNNQITAFHPGAMMQSHVNHAGEAKDIKLAIVGPDGFQGMVQHTEELAQAGVPFIFDPGQGLPLFDGATLRRSIELATYIAVNDYEAKLVCDKTGWSEDEIASRVQALIITRGEHGATIRHRDGTEQIPAVRAERVIDPTGCGDAFRGGLLYGIEHGFDWATAGRLASLMGALKIAHQGPQTYAPTRAEIDARFETAFGYRP 311
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3B1R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3B1R)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q2SZE4_BURTA | Q2SZE4)
molecular function
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016773    phosphotransferase activity, alcohol group as acceptor    Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    AMP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3b1r)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3b1r
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q2SZE4_BURTA | Q2SZE4
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  2.7.1.143
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q2SZE4_BURTA | Q2SZE4
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q2SZE4_BURTA | Q2SZE4: 3b1n 3b1o 3b1p 3b1q

(-) Related Entries Specified in the PDB File

3b1n 3b1o 3b1p 3b1q