3ABA - JenaLib

Title :   CRYSTAL STRUCTURE OF CYP105P1 IN COMPLEX WITH FILIPIN I

Authors :   L. H. Xu, S. Fushinobu, S. Takamatsu, T. Wakagi, H. Ikeda, H. Shoun

Date :   04 Dec 09 (Deposition) - 07 Apr 10 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A

Keywords :   P450, Oxidoreductase, Heme, Monooxygenase, Macrolide, Filipin, Iron, Metal-Binding, Oxidoreductase-Antibiotic Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. H. Xu, S. Fushinobu, S. Takamatsu, T. Wakagi, H. Ikeda, H. Shoun
Regio- And Stereospecificity Of Filipin Hydroxylation Sites Revealed By Crystal Structures Of Cytochrome P450 105P1 And 105D6 From Streptomyces Avermitilis
J. Biol. Chem. V. 285 16844 2010
PubMed-ID: 20375018 | Reference-DOI: 10.1074/JBC.M109.092460
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:87 , LEU A:88 , HIS A:95 , ARG A:99 , PHE A:106 , THR A:233 , LEU A:234 , ALA A:237 , ALA A:238 , THR A:241 , ARG A:290 , ALA A:340 , PHE A:341 , GLY A:342 , ALA A:345 , HIS A:346 , CYS A:348 , ILE A:349 , GLY A:350 , FLI A:404 , HOH A:685 , HOH A:823	BINDING SITE FOR RESIDUE HEM A 1408
2	AC2	SOFTWARE	GLN A:80 , LYS A:81 , PRO A:82 , LEU A:88 , THR A:182 , GLY A:186 , LEU A:189 , GLY A:190 , ASN A:229 , ILE A:236 , ALA A:237 , GLY A:288 , VAL A:313 , VAL A:388 , PHE A:389 , HOH A:646 , HOH A:664 , HOH A:727 , HOH A:761 , HOH A:823 , HOH A:857 , HEM A:1408	BINDING SITE FOR RESIDUE FLI A 404
3	AC3	SOFTWARE	PRO A:12 , LYS A:13 , ALA A:14 , HOH A:654 , HOH A:787 , HOH A:907	BINDING SITE FOR RESIDUE SO4 A 405
4	AC4	SOFTWARE	SER A:256 , PRO A:257 , ASP A:258 , GLN A:259 , HOH A:435 , HOH A:554	BINDING SITE FOR RESIDUE SO4 A 406
5	AC5	SOFTWARE	PRO A:116 , ARG A:120 , HOH A:724 , HOH A:763	BINDING SITE FOR RESIDUE SO4 A 407

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:397
 aligned with Q93H81_STRAX | Q93H81 from UniProtKB/TrEMBL  Length:399

    Alignment length:397
                                                                                                                                                                                                                                                                                                                                                                                                                                  399    
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396  |    
         Q93H81_STRAX     7 DAPTVPKARSCPFLPPDGIADIRAAAPVTRATFTSGHEAWLVTGYEEVRALLRDSSFSVQVPHALHTQDGVVTQKPGRGSLLWQDEPEHTSDRKLLAKEFTVRRMQALRPNIQRIVDEHLDAIEARGGPVDLVKTFANAVPSMVISDLFGVPVERRAEFQDIAEAMMRVDQDAAATEAAGMRLGGLLYQLVQERRANPGDDLISALITTEDPDGVVDDMFLMNAAGTLLIAAHDTTACMIGLGTALLLDSPDQLALLREDPSLVGNAVEELLRYLTIGQFGGERVATRDVELGGVRIAKGEQVVAHVLAADFDPAFVEEPERFDITRRPAPHLAFGFGAHQCIGQQLARIELQIVFETLFRRLPGLRLAKPVEELRFRHDMVFYGVHELPVTW----   -
               SCOP domains d3abaa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 3abaA00 A:7-403 Cytochrome p450                                                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................hhhhhhhhh.eeeee.....eeeee.hhhhhhhhhhh..ee............................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.....eeeee...eee..eee....eeeehhhhhh.........................hhhhh..hhhhhhhhhhhhhhhhhhhh...ee..hhhhh..............eee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3aba A   7 DAPTVPKARSCPFLPPDGIADIRAAAPVTRATFTSGHEAWLVTGYEEVRALLRDSSFSVQVPHALHTQDGVVTQKPGRGSLLWQDEPEHTSDRKLLAKEFTVRRMQALRPNIQRIVDEHLDAIEARGGPVDLVKTFANAVPSMVISDLFGVPVERRAEFQDIAEAMMRVDQDAAATEAAGMRLGGLLYQLVQERRANPGDDLISALITTEDPDGVVDDMFLMNAAGTLLIAAHDTTACMIGLGTALLLDSPDQLALLREDPSLVGNAVEELLRYLTIGQFGGERVATRDVELGGVRIAKGEQVVAHVLAADFDPAFVEEPERFDITRRPAPHLAFGFGAHQCIGQQLARIELQIVFETLFRRLPGLRLAKPVEELRFRHDMVFYGVHELPVTWHHHH 403
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q93H81_STRAX | Q93H81)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004497	monooxygenase activity	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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	Cis Peptide Bonds
		Glu A:92 - Pro A:93	[ RasMol ]
		Gly A:134 - Pro A:135	[ RasMol ]

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