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(-) Description

Title :  HYDRATION AND RECOGNITION OF METHYLATED CPG STEPS IN DNA
 
Authors :  C. Mayer-Jung, D. Moras, Y. Timsit
Date :  02 Mar 98  (Deposition) - 10 Mar 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B
Keywords :  A-Dna, Double Helix, Modified (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Mayer-Jung, D. Moras, Y. Timsit
Hydration And Recognition Of Methylated Cpg Steps In Dna
Embo J. V. 17 2709 1998
PubMed-ID: 9564052  |  Reference-DOI: 10.1093/EMBOJ/17.9.2709
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*(5CM)P*GP*CP*(5CM)P*GP*GP*(5CM)P*GP*G)- 3'
    Chains: A, B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
15CM6Mod. Nucleotide5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH B:104 , HOH B:105 , HOH B:106 , HOH B:107 , HOH B:108 , HOH B:109BINDING SITE FOR RESIDUE MG B 21

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 384D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 384D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 384D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 384D)

(-) Exons   (0, 0)

(no "Exon" information available for 384D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:10
                                         
                  384d A  1 CcGCcGGcGG 10
                             |  |  |10
                             |  |  |  
                             2-5CM |  
                                5-5CM 
                                   8-5CM


Chain B from PDB  Type:DNA  Length:10
                                         
                  384d B 11 CcGCcGGcGG 20
                             |  |  |20
                             |  |  |  
                            12-5CM |  
                               15-5CM 
                                  18-5CM
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 384D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 384D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 384D)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 384D)

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  384d
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 384D)