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(-) Description

Title :  STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA
 
Authors :  B. H. M. Mooers, B. F. Eichman, P. S. Ho
Date :  26 Jun 97  (Deposition) - 21 Jul 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  A-Dna, Double Helix, Modified (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. H. M. Mooers, B. F. Eichman, P. S. Ho
Structural Parameters From Single-Crystal Structures For Accurate Models Of A-Dna
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*(5CM)P*TP*AP*GP*C)-3')
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
15CM8Mod. Nucleotide5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
15CM2Mod. Nucleotide5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
15CM2Mod. Nucleotide5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
15CM2Mod. Nucleotide5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
15CM2Mod. Nucleotide5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 343D)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 343D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 343D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 343D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 343D)

(-) Exons   (0, 0)

(no "Exon" information available for 343D)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:6
                                     
                  343d A  1 GcTAGC  6
                             |    
                             |    
                             2-5CM


Chain B from PDB  Type:DNA  Length:6
                                     
                  343d B  7 GcTAGC 12
                             |    
                             8-5CM


Chain C from PDB  Type:DNA  Length:6
                                     
                  343d C 13 GcTAGC 18
                             |    
                             |    
                            14-5CM


Chain D from PDB  Type:DNA  Length:6
                                     
                  343d D 19 GcTAGC 24
                             |    
                             |    
                            20-5CM


Chain E from PDB  Type:DNA  Length:6
                                     
                  343d E 25 GcTAGC 30
                             |    
                             |    
                            26-5CM


Chain F from PDB  Type:DNA  Length:6
                                     
                  343d F 31 GcTAGC 36
                             |    
                             |    
                            32-5CM


Chain G from PDB  Type:DNA  Length:6
                                     
                  343d G 37 GcTAGC 42
                             |    
                             |    
                            38-5CM


Chain H from PDB  Type:DNA  Length:6
                                     
                  343d H 43 GcTAGC 48
                             |    
                             |    
                            44-5CM
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 343D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 343D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 343D)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 343D)

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  343d
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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