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(-) Description

Title :  STRUCTURE OF A DNA ANALOG OF THE PRIMER FOR HIV-1 RT SECOND STRAND SYNTHESIS
 
Authors :  G. W. Han, M. L. Kopka, D. Cascio, K. Grzeskowiak, R. E. Dickerson
Date :  07 Jan 97  (Deposition) - 27 Jan 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  B-Dna, Double Helix (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. W. Han, M. L. Kopka, D. Cascio, K. Grzeskowiak, R. E. Dickerson
Structure Of A Dna Analog Of The Primer For Hiv-1 Rt Second Strand Synthesis.
J. Mol. Biol. V. 269 811 1997
PubMed-ID: 9223643  |  Reference-DOI: 10.1006/JMBI.1997.1085
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3')
    Chains: A, C, E
    Engineered: YES
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3')
    Chains: B, D, F
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 307D)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:DNA  Length:10
                                         
                  307d A  1 CAAAGAAAAG 10
                                    10


Chain B from PDB  Type:DNA  Length:10
                                         
                  307d B 11 CTTTTCTTTG 20
                                    20


Chain C from PDB  Type:DNA  Length:10
                                         
                  307d C 21 CAAAGAAAAG 30
                                    30


Chain D from PDB  Type:DNA  Length:10
                                         
                  307d D 31 CTTTTCTTTG 40
                                    40


Chain E from PDB  Type:DNA  Length:10
                                         
                  307d E 41 CAAAGAAAAG 50
                                    50


Chain F from PDB  Type:DNA  Length:10
                                         
                  307d F 51 CTTTTCTTTG 60
                                    60
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 Classification and Annotation

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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  307d
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 Related Entries

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