2ZXV - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

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Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PUTATIVE ACETYLTRANSFERASE FROM T. THERMOPHILUS HB8

Authors :   K. Murayama, M. Kato-Murayama, T. Terada, S. Kuramitsu, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)

Date :   08 Jan 09 (Deposition) - 17 Feb 09 (Release) - 24 Mar 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)
Biol. Unit 3: A  (1x)
Biol. Unit 4: B  (1x)
Biol. Unit 5: C  (1x)
Biol. Unit 6: D  (1x)

Keywords :   Alpha/Beta Protein, Iy-Substitution, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Sakamoto, K. Murayama, K. Oki, F. Iraha, M. Kato-Murayama, M. Takahashi, K. Ohtake, T. Kobayashi, S. Kuramitsu, M. Shirouzu, S. Yokoyama
Genetic Encoding Of 3-Iodo-L-Tyrosine In Escherichia Coli For Single-Wavelength Anomalous Dispersion Phasing In Protein Crystallography
Structure V. 17 335 2009
PubMed-ID: 19278648 | Reference-DOI: 10.1016/J.STR.2009.01.008
(for further references see the PDB file header)

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN TTHA1799
	Chains	:	A, B, C, D
	EC Number	:	2.3.1.128
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET11A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	TTHA1799
	Mutation	:	YES
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	300852
	Strain	:	HB8
	Synonym	:	RIML

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D
Biological Unit 3 (1x)	:	A
Biological Unit 4 (1x)	:		B
Biological Unit 5 (1x)	:			C
Biological Unit 6 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	IYR	4	Mod. Amino Acid	3-IODO-TYROSINE

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	IYR	2	Mod. Amino Acid	3-IODO-TYROSINE

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	IYR	2	Mod. Amino Acid	3-IODO-TYROSINE

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	IYR	1	Mod. Amino Acid	3-IODO-TYROSINE

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	IYR	1	Mod. Amino Acid	3-IODO-TYROSINE

Biological Unit 5 (1, 1)

No.	Name	Count	Type	Full Name
1	IYR	1	Mod. Amino Acid	3-IODO-TYROSINE

Biological Unit 6 (1, 1)

No.	Name	Count	Type	Full Name
1	IYR	1	Mod. Amino Acid	3-IODO-TYROSINE

(no "Site" information available for 2ZXV)

(no "SS Bond" information available for 2ZXV)

(no "Cis Peptide Bond" information available for 2ZXV)

(no "SAP(SNP)/Variant" information available for 2ZXV)

(no "PROSITE Motif" information available for 2ZXV)

(no "Exon" information available for 2ZXV)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:188
 aligned with Q5SHD1_THET8 | Q5SHD1 from UniProtKB/TrEMBL  Length:194

    Alignment length:188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
         Q5SHD1_THET8     1 MWAFPERFEGRHVRLEPLALAHLPAFLRHYDPEVYRFLSRAPVAPTEEALRAHLEGLLGEPGRVNWAILFGKEVAGRISVIAPEPEHAKLELGTMLFKPFWGSPANKEAKYLLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEEWPGVKARLEARLY 188
               SCOP domains d2zxva_ A: automated matches                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhh..................hhhhhhhhhhhhhh....eeeeee....eeeeeeeeeee....eeeeeeee.hhhh.hhhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhhh.eeeeee.............eeeee....hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zxv A   1 MWAFPERFEGRHVRLEPLALAHLPAFLRHYDPEVyRFLSRAPVAPTEEALRAHLEGLLGEPGRVNWAILFGKEVAGRISVIAPEPEHAKLELGTMLFKPFWGSPANKEAKYLLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEEWPGVKARLEARLY 188
                                    10        20        30    |   40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
                                                             35-IYR

Chain B from PDB  Type:PROTEIN  Length:188
 aligned with Q5SHD1_THET8 | Q5SHD1 from UniProtKB/TrEMBL  Length:194

    Alignment length:188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
         Q5SHD1_THET8     1 MWAFPERFEGRHVRLEPLALAHLPAFLRHYDPEVYRFLSRAPVAPTEEALRAHLEGLLGEPGRVNWAILFGKEVAGRISVIAPEPEHAKLELGTMLFKPFWGSPANKEAKYLLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEEWPGVKARLEARLY 188
               SCOP domains d2zxvb_ B: automated matches                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee....eeee.hhhhhhhhhhh....hhhhh.......hhhhhhhhhhhhhhh...eeeeee......eeeeeeeee....eeeeeeee.hhhh.hhhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhh..eeeeee.............eeeee.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zxv B   1 MWAFPERFEGRHVRLEPLALAHLPAFLRHYDPEVyRFLSRAPVAPTEEALRAHLEGLLGEPGRVNWAILFGKEVAGRISVIAPEPEHAKLELGTMLFKPFWGSPANKEAKYLLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEEWPGVKARLEARLY 188
                                    10        20        30    |   40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
                                                             35-IYR

Chain C from PDB  Type:PROTEIN  Length:188
 aligned with Q5SHD1_THET8 | Q5SHD1 from UniProtKB/TrEMBL  Length:194

    Alignment length:188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
         Q5SHD1_THET8     1 MWAFPERFEGRHVRLEPLALAHLPAFLRHYDPEVYRFLSRAPVAPTEEALRAHLEGLLGEPGRVNWAILFGKEVAGRISVIAPEPEHAKLELGTMLFKPFWGSPANKEAKYLLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEEWPGVKARLEARLY 188
               SCOP domains d2zxvc_ C: automated matches                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhh................hhhhhhhhhhhhh.....eeeee.......eeeeeeeee....eeeeeeee.hhhh..hhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhh...eeeeeeeeeee.....eeeeeeee....hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zxv C   1 MWAFPERFEGRHVRLEPLALAHLPAFLRHYDPEVyRFLSRAPVAPTEEALRAHLEGLLGEPGRVNWAILFGKEVAGRISVIAPEPEHAKLELGTMLFKPFWGSPANKEAKYLLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEEWPGVKARLEARLY 188
                                    10        20        30    |   40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
                                                             35-IYR

Chain D from PDB  Type:PROTEIN  Length:188
 aligned with Q5SHD1_THET8 | Q5SHD1 from UniProtKB/TrEMBL  Length:194

    Alignment length:188
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
         Q5SHD1_THET8     1 MWAFPERFEGRHVRLEPLALAHLPAFLRHYDPEVYRFLSRAPVAPTEEALRAHLEGLLGEPGRVNWAILFGKEVAGRISVIAPEPEHAKLELGTMLFKPFWGSPANKEAKYLLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEEWPGVKARLEARLY 188
               SCOP domains d2zxvd_ D: automated matches                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeee.hhhhhhhhhhh................hhhhhhhhhhhhhhh.....eeeee..ee.eeeeeeeeehhh.eeeeeeee.hhhh.hhhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhh...eeeeeeeeeee.....eeeeeeee....hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zxv D   1 MWAFPERFEGRHVRLEPLALAHLPAFLRHYDPEVyRFLSRAPVAPTEEALRAHLEGLLGEPGRVNWAILFGKEVAGRISVIAPEPEHAKLELGTMLFKPFWGSPANKEAKYLLLRHAFEVLRAERVQFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEEWPGVKARLEARLY 188
                                    10        20        30    |   40        50        60        70        80        90       100       110       120       130       140       150       160       170       180        
                                                             35-IYR

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Acyl-CoA N-acyltransferases (Nat) (250)

Superfamily: Acyl-CoA N-acyltransferases (Nat) (250)

Family: automated matches (63)

Protein domain: automated matches (63)

Thermus thermophilus HB8 [TaxId: 300852] (2)

1a	d2zxva_	A:
1b	d2zxvb_	B:
1c	d2zxvc_	C:
1d	d2zxvd_	D:

(no "CATH Domain" information available for 2ZXV)

(no "Pfam Domain" information available for 2ZXV)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q5SHD1_THET8 | Q5SHD1)

molecular function
	GO:0008080		N-acetyltransferase activity		Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		IYR	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
(no "Sites" information available for 2zxv)

	Cis Peptide Bonds
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Biological Units
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UniProtKB/TrEMBL
	Q5SHD1_THET8 \| Q5SHD1	:	2z0z

2z0z	CRYSTAL STRUCTURE OF PUTATIVE ACETYLTRANSFERASE FROM T. THERMOPHILUS HB27
2z10	CRYSTAL STRUCTURE OF PUTATIVE ACETYLTRANSFERASE FROM T. THERMOPHILUS HB27
2z11	CRYSTAL STRUCTURE OF PUTATIVE ACETYLTRANSFERASE FROM T. THERMOPHILUS HB27 RELATED ID: TTK003001865.2 RELATED DB: TARGETDB

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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