Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF PSEUDOMONAS SP. MIS38 LIPASE IN AN OPEN CONFORMATION
 
Authors :  C. Angkawidjaja, H. Matsumura, Y. Koga, K. Takano, S. Kanaya
Date :  05 Nov 08  (Deposition) - 10 Nov 09  (Release) - 26 May 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,C
Keywords :  Family I. 3 Lipase, Beta Roll, Calcium Binding Protein, Rtx Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Angkawidjaja, H. Matsumura, Y. Koga, K. Takano, S. Kanaya
X-Ray Crystallographic And Md Simulation Studies On The Mechanism Of Interfacial Activation Of A Family I. 3 Lipase With Two Lids
J. Mol. Biol. 2010
PubMed-ID: 20438738  |  Reference-DOI: 10.1016/J.JMB.2010.04.051

(-) Compounds

Molecule 1 - LIPASE
    Chains: A, C
    EC Number: 3.1.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PUC18
    Expression System Strain: DH5
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS
    Organism Taxid: 91465
    Strain: MIS38

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 22)

Asymmetric/Biological Unit (1, 22)
No.NameCountTypeFull Name
1CA22Ligand/IonCALCIUM ION

(-) Sites  (22, 22)

Asymmetric Unit (22, 22)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:253 , ASP A:275 , ASP A:283 , ASN A:284 , HOH A:633 , HOH A:635BINDING SITE FOR RESIDUE CA A 618
02AC2SOFTWARELYS A:278 , ALA A:281 , ASP A:283 , ASP A:337 , HOH A:704 , HOH A:910BINDING SITE FOR RESIDUE CA A 619
03AC3SOFTWARESER A:374 , SER A:376 , ASP A:378 , GLY A:391 , ALA A:393 , ASP A:396BINDING SITE FOR RESIDUE CA A 620
04AC4SOFTWAREGLY A:383 , GLY A:385 , ASP A:387 , ASP A:400 , GLY A:402 , ASN A:405BINDING SITE FOR RESIDUE CA A 621
05AC5SOFTWAREARG A:392 , GLY A:394 , ASP A:396 , GLY A:409 , ALA A:411 , ASN A:414BINDING SITE FOR RESIDUE CA A 622
06AC6SOFTWARETHR A:494 , GLY A:496 , ASP A:498 , GLY A:511 , ASP A:513 , ASP A:516BINDING SITE FOR RESIDUE CA A 623
07AC7SOFTWARELEU A:512 , GLY A:514 , ASP A:516 , GLY A:529 , ALA A:531 , ASP A:534BINDING SITE FOR RESIDUE CA A 624
08AC8SOFTWAREGLY A:521 , GLY A:523 , ASP A:525 , SER A:538 , GLY A:540 , ASP A:543BINDING SITE FOR RESIDUE CA A 625
09AC9SOFTWAREGLY A:530 , GLY A:532 , ASP A:534 , PHE A:551 , ASP A:554 , HOH A:1092BINDING SITE FOR RESIDUE CA A 626
10BC1SOFTWAREGLY A:541 , THR A:560 , ASN A:562 , ASP A:563 , HOH A:1232 , HOH A:1263BINDING SITE FOR RESIDUE CA A 627
11BC2SOFTWARETHR A:118 , GLN A:120 , SER A:144 , ASP A:153 , ASP A:157 , HOH A:1146BINDING SITE FOR RESIDUE CA A 628
12BC3SOFTWAREGLU C:253 , ASP C:275 , ASP C:283 , ASN C:284 , HOH C:754 , HOH C:1170BINDING SITE FOR RESIDUE CA C 618
13BC4SOFTWARELYS C:278 , ALA C:281 , ASP C:283 , ASP C:337 , HOH C:717 , HOH C:866BINDING SITE FOR RESIDUE CA C 619
14BC5SOFTWARESER C:374 , SER C:376 , ASP C:378 , GLY C:391 , ALA C:393 , ASP C:396BINDING SITE FOR RESIDUE CA C 620
15BC6SOFTWAREGLY C:383 , GLY C:385 , ASP C:387 , ASP C:400 , GLY C:402 , ASN C:405BINDING SITE FOR RESIDUE CA C 621
16BC7SOFTWAREARG C:392 , GLY C:394 , ASP C:396 , GLY C:409 , ALA C:411 , ASN C:414BINDING SITE FOR RESIDUE CA C 622
17BC8SOFTWARETHR C:494 , GLY C:496 , ASP C:498 , GLY C:511 , ASP C:513 , ASP C:516BINDING SITE FOR RESIDUE CA C 623
18BC9SOFTWARELEU C:512 , GLY C:514 , ASP C:516 , GLY C:529 , ALA C:531 , ASP C:534BINDING SITE FOR RESIDUE CA C 624
19CC1SOFTWAREGLY C:521 , GLY C:523 , ASP C:525 , SER C:538 , GLY C:540 , ASP C:543BINDING SITE FOR RESIDUE CA C 625
20CC2SOFTWAREGLY C:530 , GLY C:532 , ASP C:534 , PHE C:551 , ASP C:554 , HOH C:817BINDING SITE FOR RESIDUE CA C 626
21CC3SOFTWAREGLY C:541 , THR C:560 , ASN C:562 , ASP C:563 , HOH C:1139 , HOH C:1266BINDING SITE FOR RESIDUE CA C 627
22CC4SOFTWARETHR C:118 , GLN C:120 , SER C:144 , ASP C:153 , ASP C:157 , HOH C:1202BINDING SITE FOR RESIDUE CA C 628

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZVD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ZVD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZVD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZVD)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZVD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:608
 aligned with Q9RBY1_9PSED | Q9RBY1 from UniProtKB/TrEMBL  Length:617

    Alignment length:616
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611      
         Q9RBY1_9PSED     2 GVYDYKNFGTADSKALFSDAMAITLYSYHNLDNGFAAGYQHNGFGLGLPATLVTALLGGTDSQGVIPGIPWNPDSEKLALDAVKKAGWTPITASQLGYDGKTDARGTFFGEKAGYTTAQVEILGKYDAQGHLTEIGIAFRGTSGPRENLILDSIGDVINDLLAAFGPKDYAKNYVGEAFGNLLNDVVAFAKANGLSGKDVLVSGHSLGGLAVNSMADLSGGKWGGFFADSNYIAYASPTQSSTDKVLNVGYENDPVFRALDGSTFTGASVGVHDAPKESATDNIVSFNDHYASTAWNLLPFSILNIPTWISHLPTAYGDGMNRIIESKFYDLTSKDSTIIVANLSDPARANTWVQDLNRNAETHKGSTFIIGSDSNDLIQGGSGNDYLEGRAGNDTFRDGGGYNVILGGAGNNTLDLQKSVNTFDFANDGAGNLYVRDANGGISITRDIGSIVTKEPGFLWGLFKDDVTHSVTASGLKVGSNVTQYDASVKGTNGADTLKAHAGGDWLFGLDGNDHLIGGVGNDVFVGGAGNDLMESGGGADTFLFNGAFGQDRVVGFTSNDKLVFLGVQGVLPNDDFRAHASMVGQDTVLKFGGDSVTLVGVALNSLSADGIVIA 617
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhh...............hhhhhhhhhhhhh.eee.hhhhhh..........ee.........eeeeeeee.....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh..hhh.eeeeeehhhhhhhhhhhhhh..hhhhh....eeeee..........eeee................hhhhhh............eeeehhhhhh.hhhhh.....hhhhhhhhhhhhhhhhhhhhhh..hhhhh....eeeee..hhhhhh..ee.............eeee......eeee....eeee......eeee....eeee......eee...hhhhheeee.....eeee.....eeeee...eeeee..--------.eeeeeee..eeee..eee....eee......eee......eee......eee......eee......eee......eeeee....eeeee......eeeee.........hhhh.eeee..eeeeee..eeeee...hhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zvd A   2 GVYDYKNFGTADSKALFSDAMAITLYSYHNLDNGFAAGYQHNGFGLGLPATLVTALLGGTDSQGVIPGIPWNPDSEKLALDAVKKAGWTPITASQLGYDGKTDARGTFFGEKAGYTTAQVEILGKYDAQGHLTEIGIAFRGTSGPRENLILDSIGDVINDLLAAFGPKDYAKNYVGEAFGNLLNDVVAFAKANGLSGKDVLVSGHSLGGLAVNSMADLSGGKWGGFFADSNYIAYASPTQSSTDKVLNVGYENDPVFRALDGSTFTGASVGVHDAPKESATDNIVSFNDHYASTAWNLLPFSILNIPTWISHLPTAYGDGMNRIIESKFYDLTSKDSTIIVANLSDPARANTWVQDLNRNAETHKGSTFIIGSDSNDLIQGGSGNDYLEGRAGNDTFRDGGGYNVILGGAGNNTLDLQKSVNTFDFANDGAGNLYVRDANGGISITRDIGSIVTKEP--------DDVTHSVTASGLKVGSNVTQYDASVKGTNGADTLKAHAGGDWLFGLDGNDHLIGGVGNDVFVGGAGNDLMESGGGADTFLFNGAFGQDRVVGFTSNDKLVFLGVQGVLPNDDFRAHASMVGQDTVLKFGGDSVTLVGVALNSLSADGIVIA 617
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451      |  -     | 471       481       491       501       511       521       531       541       551       561       571       581       591       601       611      
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  458      467                                                                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:616
 aligned with Q9RBY1_9PSED | Q9RBY1 from UniProtKB/TrEMBL  Length:617

    Alignment length:616
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611      
         Q9RBY1_9PSED     2 GVYDYKNFGTADSKALFSDAMAITLYSYHNLDNGFAAGYQHNGFGLGLPATLVTALLGGTDSQGVIPGIPWNPDSEKLALDAVKKAGWTPITASQLGYDGKTDARGTFFGEKAGYTTAQVEILGKYDAQGHLTEIGIAFRGTSGPRENLILDSIGDVINDLLAAFGPKDYAKNYVGEAFGNLLNDVVAFAKANGLSGKDVLVSGHSLGGLAVNSMADLSGGKWGGFFADSNYIAYASPTQSSTDKVLNVGYENDPVFRALDGSTFTGASVGVHDAPKESATDNIVSFNDHYASTAWNLLPFSILNIPTWISHLPTAYGDGMNRIIESKFYDLTSKDSTIIVANLSDPARANTWVQDLNRNAETHKGSTFIIGSDSNDLIQGGSGNDYLEGRAGNDTFRDGGGYNVILGGAGNNTLDLQKSVNTFDFANDGAGNLYVRDANGGISITRDIGSIVTKEPGFLWGLFKDDVTHSVTASGLKVGSNVTQYDASVKGTNGADTLKAHAGGDWLFGLDGNDHLIGGVGNDVFVGGAGNDLMESGGGADTFLFNGAFGQDRVVGFTSNDKLVFLGVQGVLPNDDFRAHASMVGQDTVLKFGGDSVTLVGVALNSLSADGIVIA 617
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HemolysinCabind-2z------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HemolysinCabind-2z------------------------------------------------------------------------ Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HemolysinCabind-2z------------------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HemolysinCabind-2z------------------------------------------------------------------------ Pfam domains (4)
           Pfam domains (5) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HemolysinCabind-2z------------------------------------------------------------------------ Pfam domains (5)
           Pfam domains (6) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HemolysinCabind-2z------------------------------------------------------------------------ Pfam domains (6)
           Pfam domains (7) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HemolysinCabind-2z------------------------------------------------------------------------ Pfam domains (7)
           Pfam domains (8) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HemolysinCabind-2z------------------------------------------------------------------------ Pfam domains (8)
           Pfam domains (9) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HemolysinCabind-2z------------------------------------------------------------------------ Pfam domains (9)
          Pfam domains (10) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HemolysinCabind-2z------------------------------------------------------------------------ Pfam domains (10)
          Pfam domains (11) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HemolysinCabind-2z------------------------------------------------------------------------ Pfam domains (11)
          Pfam domains (12) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HemolysinCabind-2z------------------------------------------------------------------------ Pfam domains (12)
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhh...............hhhhhhhhhhhhh.eee.hhhhhh..........ee.........eeeeeeee.....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh...hhh.eeeeeehhhhhhhhhhhhhh..hhhhh....eeeee..........eeee................hhhhhh............eeeehhhhhh.hhhhh.....hhhhhhhhhhhhhhhhhhhhhh..hhhhh....eeeee..hhhhhh..ee.............eeee......eeee....eeee......eeee....eeee......eee...hhhhheeee....eeeee.....eeeee...eeeeeeehhhhhh.eeeeeeeee..eeee..eee....eee......eee......eee......eee......eee......eee......eeeee....eeeee......eeeee.........hhhh.eeee..eeeeee..eeeee...hhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zvd C   2 GVYDYKNFGTADSKALFSDAMAITLYSYHNLDNGFAAGYQHNGFGLGLPATLVTALLGGTDSQGVIPGIPWNPDSEKLALDAVKKAGWTPITASQLGYDGKTDARGTFFGEKAGYTTAQVEILGKYDAQGHLTEIGIAFRGTSGPRENLILDSIGDVINDLLAAFGPKDYAKNYVGEAFGNLLNDVVAFAKANGLSGKDVLVSGHSLGGLAVNSMADLSGGKWGGFFADSNYIAYASPTQSSTDKVLNVGYENDPVFRALDGSTFTGASVGVHDAPKESATDNIVSFNDHYASTAWNLLPFSILNIPTWISHLPTAYGDGMNRIIESKFYDLTSKDSTIIVANLSDPARANTWVQDLNRNAETHKGSTFIIGSDSNDLIQGGSGNDYLEGRAGNDTFRDGGGYNVILGGAGNNTLDLQKSVNTFDFANDGAGNLYVRDANGGISITRDIGSIVTKEPGFLWGLFKDDVTHSVTASGLKVGSNVTQYDASVKGTNGADTLKAHAGGDWLFGLDGNDHLIGGVGNDVFVGGAGNDLMESGGGADTFLFNGAFGQDRVVGFTSNDKLVFLGVQGVLPNDDFRAHASMVGQDTVLKFGGDSVTLVGVALNSLSADGIVIA 617
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZVD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ZVD)

(-) Pfam Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: HemolysinCabind] (16)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,C   (Q9RBY1_9PSED | Q9RBY1)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2zvd)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2zvd
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q9RBY1_9PSED | Q9RBY1
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  3.1.1.3
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q9RBY1_9PSED | Q9RBY1
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9RBY1_9PSED | Q9RBY1: 2z8x 2z8z 2zj6 2zj7 3a6z 3a70

(-) Related Entries Specified in the PDB File

2z8x 2z8z 2zj6 2zj7 3a6z 3a70