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(-) Description

Title :  MTRUVA FORM II
 
Authors :  J. R. Prabu, S. Thamotharan, J. S. Khanduja, N. R. Chandra, K. Muniyappa M. Vijayan
Date :  01 Oct 08  (Deposition) - 05 May 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (2x)
Keywords :  Recombination, Branch Migration, Holliday Junction, Dna Binding, Oligomerization, Acidic Pin, Dna Binding Protein, Atp-Binding, Dna Damage, Dna Recombination, Dna Repair, Dna-Binding, Helicase, Hydrolase, Nucleotide-Binding, Sos Response (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. R. Prabu, S. Thamotharan, J. S. Khanduja, N. R. Chandra, K. Muniyappa, M. Vijayan
Crystallographic And Modelling Studies On Mycobacterium Tuberculosis Ruva Additional Role Of Ruvb-Binding Domain An Inter Species Variability
Biochim. Biophys. Acta V. 1794 1001 2009
PubMed-ID: 19374958  |  Reference-DOI: 10.1016/J.BBAPAP.2009.04.003

(-) Compounds

Molecule 1 - HOLLIDAY JUNCTION ATP-DEPENDENT DNA HELICASE RUVA
    Chains: A, B, C, D
    EC Number: 3.6.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMTRA
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: RUVA
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS
    Organism Taxid: 1773

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1GOL8Ligand/IonGLYCEROL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:81 , ARG A:83 , LEU A:84BINDING SITE FOR RESIDUE GOL A 502
2AC2SOFTWAREGLY B:81 , PRO B:82 , ARG B:83 , HOH B:501BINDING SITE FOR RESIDUE GOL B 500
3AC3SOFTWAREGLY C:81 , ARG C:83 , LEU C:84BINDING SITE FOR RESIDUE GOL C 503
4AC4SOFTWAREGLY D:81 , PRO D:82 , ARG D:83 , LEU D:84BINDING SITE FOR RESIDUE GOL D 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZTC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2ZTC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZTC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZTC)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZTC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:188
 aligned with RUVA_MYCTO | P9WGW2 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:201
                                  1                                                                                                                                                                                                  
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194 
           RUVA_MYCTO     - ------MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGKA 195
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ztcA01 A:-5-64 Nucleic acid-binding proteins                         2ztcA02 A:65-145 5' to 3' exonuclease, C-terminal subdomain                      2ztcA03 A:146-195                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeee...eeeeee..eeeeee.hhhhhhhh....eeeeeeeeeee..eeeeeee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh-------------..hhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ztc A  -5 GRGSEFMIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV-------------HAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGKA 195
                                     4        14        24        34        44        54        64        74        84        94       104       114       124      |  -         -|      154       164       174       184       194 
                                                                                                                                                                  131           145                                                  


Chain A from PDB  Type:PROTEIN  Length:188
 aligned with RUVA_MYCTU | P9WGW3 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:201
                                  1                                                                                                                                                                                                  
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194 
           RUVA_MYCTU     - ------MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGKA 195
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ztcA01 A:-5-64 Nucleic acid-binding proteins                         2ztcA02 A:65-145 5' to 3' exonuclease, C-terminal subdomain                      2ztcA03 A:146-195                                  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeee...eeeeee..eeeeee.hhhhhhhh....eeeeeeeeeee..eeeeeee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh-------------..hhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ztc A  -5 GRGSEFMIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV-------------HAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGKA 195
                                     4        14        24        34        44        54        64        74        84        94       104       114       124      |  -         -|      154       164       174       184       194 
                                                                                                                                                                  131           145                                                  


Chain B from PDB  Type:PROTEIN  Length:187
 aligned with RUVA_MYCTO | P9WGW2 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:200
                                  1                                                                                                                                                                                                 
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194
           RUVA_MYCTO     - ------MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK 194
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ztcB01 B:-5-64 Nucleic acid-binding proteins                         2ztcB02 B:65-145 5' to 3' exonuclease, C-terminal subdomain                      2ztcB03 B:146-194                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeee...eeeeee..eeeeee.hhhhhhhh....eeeeeeeeeee..eeeeeee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh-------------..hhhhhhhhhhhh..hhhhhhhhhhhhhhhh.....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ztc B  -5 GRGSEFMIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV-------------HAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK 194
                                     4        14        24        34        44        54        64        74        84        94       104       114       124      |  -         -|      154       164       174       184       194
                                                                                                                                                                  131           145                                                 


Chain B from PDB  Type:PROTEIN  Length:187
 aligned with RUVA_MYCTU | P9WGW3 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:200
                                  1                                                                                                                                                                                                 
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194
           RUVA_MYCTU     - ------MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK 194
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ztcB01 B:-5-64 Nucleic acid-binding proteins                         2ztcB02 B:65-145 5' to 3' exonuclease, C-terminal subdomain                      2ztcB03 B:146-194                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeee...eeeeee..eeeeee.hhhhhhhh....eeeeeeeeeee..eeeeeee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh-------------..hhhhhhhhhhhh..hhhhhhhhhhhhhhhh.....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ztc B  -5 GRGSEFMIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV-------------HAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK 194
                                     4        14        24        34        44        54        64        74        84        94       104       114       124      |  -         -|      154       164       174       184       194
                                                                                                                                                                  131           145                                                 


Chain C from PDB  Type:PROTEIN  Length:187
 aligned with RUVA_MYCTO | P9WGW2 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:200
                                  1                                                                                                                                                                                                 
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194
           RUVA_MYCTO     - ------MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK 194
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ztcC01 C:-5-64 Nucleic acid-binding proteins                         2ztcC02 C:65-145 5' to 3' exonuclease, C-terminal subdomain                      2ztcC03 C:146-194                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeee...eeeeee..eeeeee.hhhhhhhh....eeeeeeeeeee..eeeeeee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh-------------..hhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ztc C  -5 GRGSEFMIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV-------------HAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK 194
                                     4        14        24        34        44        54        64        74        84        94       104       114       124      |  -         -|      154       164       174       184       194
                                                                                                                                                                  131           145                                                 


Chain C from PDB  Type:PROTEIN  Length:187
 aligned with RUVA_MYCTU | P9WGW3 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:200
                                  1                                                                                                                                                                                                 
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194
           RUVA_MYCTU     - ------MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK 194
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ztcC01 C:-5-64 Nucleic acid-binding proteins                         2ztcC02 C:65-145 5' to 3' exonuclease, C-terminal subdomain                      2ztcC03 C:146-194                                 CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeee...eeeeee..eeeeee.hhhhhhhh....eeeeeeeeeee..eeeeeee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh-------------..hhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ztc C  -5 GRGSEFMIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV-------------HAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGK 194
                                     4        14        24        34        44        54        64        74        84        94       104       114       124      |  -         -|      154       164       174       184       194
                                                                                                                                                                  131           145                                                 


Chain D from PDB  Type:PROTEIN  Length:188
 aligned with RUVA_MYCTO | P9WGW2 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:201
                                  1                                                                                                                                                                                                  
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194 
           RUVA_MYCTO     - ------MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGKA 195
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ztcD01 D:-5-64 Nucleic acid-binding proteins                         2ztcD02 D:65-145 5' to 3' exonuclease, C-terminal subdomain                      2ztcD03 D:146-195                                  CATH domains
           Pfam domains (1) ------RuvA_N-2ztcD01 D:1-61                                        ------------------------------------------------------------------------------------RuvA_C-2ztcD05 D:146-193                        -- Pfam domains (1)
           Pfam domains (2) ------RuvA_N-2ztcD02 D:1-61                                        ------------------------------------------------------------------------------------RuvA_C-2ztcD06 D:146-193                        -- Pfam domains (2)
           Pfam domains (3) ------RuvA_N-2ztcD03 D:1-61                                        ------------------------------------------------------------------------------------RuvA_C-2ztcD07 D:146-193                        -- Pfam domains (3)
           Pfam domains (4) ------RuvA_N-2ztcD04 D:1-61                                        ------------------------------------------------------------------------------------RuvA_C-2ztcD08 D:146-193                        -- Pfam domains (4)
         Sec.struct. author .......eeeeeeeeeee...eeeeee..eeeeee.hhhhhhhh....eeeeeeeeeee..eeeeeee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh-------------..hhhhhhhhhhhh....hhhhhhhhhhhhhh.....hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ztc D  -5 GRGSEFMIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV-------------HAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGKA 195
                                     4        14        24        34        44        54        64        74        84        94       104       114       124      |  -         -|      154       164       174       184       194 
                                                                                                                                                                  131           145                                                  


Chain D from PDB  Type:PROTEIN  Length:188
 aligned with RUVA_MYCTU | P9WGW3 from UniProtKB/Swiss-Prot  Length:196

    Alignment length:201
                                  1                                                                                                                                                                                                  
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194 
           RUVA_MYCTU     - ------MIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKVGVAATGGALSTNGHAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGKA 195
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ztcD01 D:-5-64 Nucleic acid-binding proteins                         2ztcD02 D:65-145 5' to 3' exonuclease, C-terminal subdomain                      2ztcD03 D:146-195                                  CATH domains
           Pfam domains (1) ------RuvA_N-2ztcD01 D:1-61                                        ------------------------------------------------------------------------------------RuvA_C-2ztcD05 D:146-193                        -- Pfam domains (1)
           Pfam domains (2) ------RuvA_N-2ztcD02 D:1-61                                        ------------------------------------------------------------------------------------RuvA_C-2ztcD06 D:146-193                        -- Pfam domains (2)
           Pfam domains (3) ------RuvA_N-2ztcD03 D:1-61                                        ------------------------------------------------------------------------------------RuvA_C-2ztcD07 D:146-193                        -- Pfam domains (3)
           Pfam domains (4) ------RuvA_N-2ztcD04 D:1-61                                        ------------------------------------------------------------------------------------RuvA_C-2ztcD08 D:146-193                        -- Pfam domains (4)
         Sec.struct. author .......eeeeeeeeeee...eeeeee..eeeeee.hhhhhhhh....eeeeeeeeeee..eeeeeee.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh-------------..hhhhhhhhhhhh....hhhhhhhhhhhhhh.....hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ztc D  -5 GRGSEFMIASVRGEVLEVALDHVVIEAAGVGYRVNATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV-------------HAVRSPVVEALVGLGFAAKQAEEATDTVLAANHDATTSSALRSALSLLGKA 195
                                     4        14        24        34        44        54        64        74        84        94       104       114       124      |  -         -|      154       164       174       184       194 
                                                                                                                                                                  131           145
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZTC)

(-) CATH Domains  (3, 12)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: OB (224)
(-)
Clan: UBA (32)

(-) Gene Ontology  (15, 28)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (RUVA_MYCTO | P9WGW2)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003678    DNA helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.
    GO:0009378    four-way junction helicase activity    Catalysis of the unwinding of the DNA helix of DNA containing four-way junctions, including Holliday junctions.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0032508    DNA duplex unwinding    The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.
    GO:0006310    DNA recombination    Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0009432    SOS response    An error-prone process for repairing damaged microbial DNA.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
cellular component
    GO:0009379    Holliday junction helicase complex    A DNA helicase complex that forms part of a Holliday junction resolvase complex, where the helicase activity is involved in the migration of the junction branch point. The best-characterized example is the E. coli RuvAB complex, in which a hexamer of RuvB subunits possesses helicase activity that is modulated by association with RuvA.

Chain A,B,C,D   (RUVA_MYCTU | P9WGW3)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003678    DNA helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix.
    GO:0009378    four-way junction helicase activity    Catalysis of the unwinding of the DNA helix of DNA containing four-way junctions, including Holliday junctions.
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0032508    DNA duplex unwinding    The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.
    GO:0006310    DNA recombination    Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
    GO:0006281    DNA repair    The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
    GO:0009432    SOS response    An error-prone process for repairing damaged microbial DNA.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
    GO:0000724    double-strand break repair via homologous recombination    The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule.
cellular component
    GO:0009379    Holliday junction helicase complex    A DNA helicase complex that forms part of a Holliday junction resolvase complex, where the helicase activity is involved in the migration of the junction branch point. The best-characterized example is the E. coli RuvAB complex, in which a hexamer of RuvB subunits possesses helicase activity that is modulated by association with RuvA.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        RUVA_MYCTO | P9WGW2: 2h5x 2ztd 2zte
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(-) Related Entries Specified in the PDB File

2h5x MTRUVA FORM I
2ztd MTRUVA FORM III
2zte MTRUVA FORM IV