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(-) Description

Title :  CRYSTAL STRUCTURE OF METALLO-BETA-LACTAMASE FAMILY PROTEIN TTHA1429 FROM THERMUS THERMOPHILUS HB8
 
Authors :  A. Yamamura, K. Nagata, Y. Agari, A. Ebihara, N. Nakagawa, S. Yokoyama, S. Kuramitsu, M. Tanokura
Date :  05 May 08  (Deposition) - 17 Mar 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Metallo-Beta-Lactamase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Yamamura, J. Ohtsuka, K. Kubota, Y. Agari, A. Ebihara, N. Nakagawa, K. Nagata, M. Tanokura
Crystal Structure Of Ttha1429, A Novel Metallo-Beta-Lactamase Superfamily Protein From Thermus Thermophilus Hb8.
Proteins V. 73 1053 2008
PubMed-ID: 18767153  |  Reference-DOI: 10.1002/PROT.22215

(-) Compounds

Molecule 1 - METALLO-BETA-LACTAMASE FAMILY PROTEIN
    Chains: A
    EC Number: 3.-.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-11A
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TTHA1429
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:70 , HIS A:72 , HIS A:171 , ASP A:190 , HOH A:320BINDING SITE FOR RESIDUE ZN A 318
2AC2SOFTWAREASP A:74 , HIS A:75 , ASP A:190 , HIS A:233 , HOH A:320BINDING SITE FOR RESIDUE ZN A 319

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZO4)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:309 -Pro A:310
2Pro A:310 -Pro A:311

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZO4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZO4)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZO4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:301
 aligned with Q5SIE5_THET8 | Q5SIE5 from UniProtKB/TrEMBL  Length:317

    Alignment length:315
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312     
         Q5SIE5_THET8     3 ALLPGLYLLPVPIPYPLKTVNLYLLQGAGEVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEGLGARVFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETVEKTRERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAFYLEEEGVLLAGDALLEKVSPNVGLWAYTRENPLKDFLRSLDRLADLGARVAYAGHFGPIADVRQRAEELKAHHQARLEALLALLDGPKTAWELSLHLFPQELDPAGRRFAFAETLAHLEYLREEGAVGRGGPPYRYFRR 317
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------Lactamase_B-2zo4A01 A:17-233                                                                                                                                                                                             --------------------------------------------       --------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee......eeeeeeeee..eeeee.....hhhhhhhhhhhhhhh..hhhhh.eeee...hhhhhhhhhhhhhh..eeeee.hhh.hhhhhhhh...hhhhhhhhhhhh....-------hhhhhhhh........eee....eeee..eeeeeee........eeeee....eeeee...................hhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhh.-------hhhhhhhhhhhhhhhhhh..eeee....eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zo4 A   3 ALLPGLYLLPVPIPYPLKTVNLYLLQGAGEVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEGLGARVFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPE-------ETVEKTRERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAFYLEEEGVLLAGDALLEKVSPNVGLWAYTRENPLKDFLRSLDRLADLGARVAYAGHFGPIADVRQRAEELKAHHQARLEALLALLDGPKTAWELSLHLFP-------RRFAFAETLAHLEYLREEGAVGRGGPPYRYFRR 317
                                    12        22        32        42        52        62        72        82        92       102       112       122 |     132       142       152       162       172       182       192       202       212       222       232       242       252       262       272    |    -  |    292       302       312     
                                                                                                                                                   124     132                                                                                                                                              277     285
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZO4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ZO4)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: Metallo-HOrase (67)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q5SIE5_THET8 | Q5SIE5)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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