Chain A from PDB Type:PROTEIN Length:86
aligned with PAGR_BACAN | O31178 from UniProtKB/Swiss-Prot Length:99
Alignment length:86
20 30 40 50 60 70 80 90
PAGR_BACAN 11 YMSLEDDAELLKTMAHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGKVLKRNRQGLEIYYSINNPKVEGIIKLLN 96
SCOP domains -------------------------------------------------------------------------------------- SCOP domains
CATH domains -------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhh.hhhhhhhhhhhhh....eeeee..eeeee..hhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------- Transcript
2zkz A 11 YmSLEDDAELLKTmAHPmRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKmRGKVLKRNRQGLEIYYSINNPKVEGIIKLLN 96
| 20 | |30 40 50 60 | 70 80 90
| 24-MSE 65-MSE
12-MSE 28-MSE
Chain B from PDB Type:PROTEIN Length:86
aligned with PAGR_BACAN | O31178 from UniProtKB/Swiss-Prot Length:99
Alignment length:86
20 30 40 50 60 70 80 90
PAGR_BACAN 11 YMSLEDDAELLKTMAHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGKVLKRNRQGLEIYYSINNPKVEGIIKLLN 96
SCOP domains -------------------------------------------------------------------------------------- SCOP domains
CATH domains -------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhh.hhhhhhhhhhhhh...eeeeee..eeeeee.hhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------- Transcript
2zkz B 11 YmSLEDDAELLKTmAHPmRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKmRGKVLKRNRQGLEIYYSINNPKVEGIIKLLN 96
| 20 | |30 40 50 60 | 70 80 90
12-MSE 24-MSE 65-MSE
28-MSE
Chain C from PDB Type:PROTEIN Length:87
aligned with PAGR_BACAN | O31178 from UniProtKB/Swiss-Prot Length:99
Alignment length:87
19 29 39 49 59 69 79 89
PAGR_BACAN 10 EYMSLEDDAELLKTMAHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGKVLKRNRQGLEIYYSINNPKVEGIIKLLN 96
SCOP domains --------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eehhhhhhhhh.hhhhhhhhhhhhh...eeeeee..eeeeee.hhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------- Transcript
2zkz C 10 EYmSLEDDAELLKTmAHPmRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKmRGKVLKRNRQGLEIYYSINNPKVEGIIKLLN 96
| 19 | 29 39 49 59 | 69 79 89
12-MSE 24-MSE 65-MSE
28-MSE
Chain D from PDB Type:PROTEIN Length:82
aligned with PAGR_BACAN | O31178 from UniProtKB/Swiss-Prot Length:99
Alignment length:89
19 29 39 49 59 69 79 89
PAGR_BACAN 10 EYMSLEDDAELLKTMAHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGKVLKRNRQGLEIYYSINNPKVEGIIKLLNPI 98
SCOP domains ----------------------------------------------------------------------------------------- SCOP domains
CATH domains ----------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) --------HTH_20-2zkzD01 D:18-72 -------------------------- Pfam domains (1)
Pfam domains (2) --------HTH_20-2zkzD02 D:18-72 -------------------------- Pfam domains (2)
Pfam domains (3) --------HTH_20-2zkzD03 D:18-72 -------------------------- Pfam domains (3)
Pfam domains (4) --------HTH_20-2zkzD04 D:18-72 -------------------------- Pfam domains (4)
Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhh...ee.-------..ee.hhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------- Transcript
2zkz D 10 EYmSLEDDAELLKTmAHPmRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKmRGKVLKR-------YYSINNPKVEGIIKLLNPI 98
| 19 | 29 39 49 59 | 69 | -| 89
12-MSE 24-MSE 65-MSE 72 80
28-MSE
Legend: |
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→ Mismatch |
(orange background) |
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→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |