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(-) Description

Title :  CRYSTAL STRUCTURE OF SCO6571 FROM STREPTOMYCES COELICOLOR A3(2)
 
Authors :  P. Begum, Y. G. Gao, N. Sakai, M. Yao, N. Watanabe, I. Tanaka
Date :  27 Nov 07  (Deposition) - 02 Dec 08  (Release) - 02 Dec 08  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Tim-Barrel Fold, Dna-Binding, Dna Binding Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Begum, N. Sakai, T. Hayashi, Y. G. Gao, T. Tamura, N. Watanabe, M. Yao, I. Tanaka
Crystal Structure Of Sco6571 From Streptomyces Coelicolor A3(2)
Protein Pept. Lett. V. 15 709 2008
PubMed-ID: 18782066
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE DNA-BINDING PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: RHODOCOCCUS ERYTHROPOLIS
    Expression System Plasmid: PTIP-QC2
    Expression System Strain: L-88
    Expression System Taxid: 1833
    Expression System Vector Type: PLASMID
    Gene: SCO6571
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 1902
    Strain: A3(2)

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric/Biological Unit (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2ZDS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2ZDS)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Phe A:142 -Pro A:143
2Phe B:142 -Pro B:143
3Phe C:142 -Pro C:143
4Phe D:142 -Pro D:143
5Phe E:142 -Pro E:143
6Phe F:142 -Pro F:143

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2ZDS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2ZDS)

(-) Exons   (0, 0)

(no "Exon" information available for 2ZDS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:321
 aligned with O69946_STRCO | O69946 from UniProtKB/TrEMBL  Length:332

    Alignment length:321
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321 
         O69946_STRCO     2 PRNFTLFTGQWADLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLDPVGFLWDFRDRIYHVDCKEARKRLDGRNGRLGSHLPWGDPRRGWDFVSAGHGDVPWEDVFRMLRSIDYQGPVSVEWEDAGMDRLQGAPEALTRLKAFDFEPP 322
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhh..hhhhhhhhhhhhh..eeeee......hhhhhhhh.hhhhhhhhhhhhh..eeeeeeehhhhhh......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhh.....eeeee.hhhhhhh..hhhhhhhhh...eeeeee.eeee.....................eeee.......hhhhhhhhhhhh.....eee.......hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zds A   1 PRNFTLFTGQWADLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAmFPPAPESmIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLDPVGFLWDFRDRIYHVDCKEARKRLDGRNGRLGSHLPWGDPRRGWDFVSAGHGDVPWEDVFRmLRSIDYQGPVSVEWEDAGmDRLQGAPEALTRLKAFDFEPP 321
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|      150       160       170       180       190       200       210       220       230       240       250       260       270       280|      290       300       310       320 
                                                                                                                                                                      141-MSE 149-MSE                                                                                                                             281-MSE            300-MSE                 


Chain B from PDB  Type:PROTEIN  Length:322
 aligned with O69946_STRCO | O69946 from UniProtKB/TrEMBL  Length:332

    Alignment length:322
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321  
         O69946_STRCO     2 PRNFTLFTGQWADLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLDPVGFLWDFRDRIYHVDCKEARKRLDGRNGRLGSHLPWGDPRRGWDFVSAGHGDVPWEDVFRMLRSIDYQGPVSVEWEDAGMDRLQGAPEALTRLKAFDFEPPS 323
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhh..hhhhhhhhhhhhh..eeeee......hhhhhhhh.hhhhhhhhhhhhh......eehhhhhh.......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhh.....eeeeehhhhhhhhh.hhhhhhhhh...eeeeee.eeee.....................eeee.......hhhhhhhhhhhh.....eee.......hhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zds B   1 PRNFTLFTGQWADLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAmFPPAPESmIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLDPVGFLWDFRDRIYHVDCKEARKRLDGRNGRLGSHLPWGDPRRGWDFVSAGHGDVPWEDVFRmLRSIDYQGPVSVEWEDAGmDRLQGAPEALTRLKAFDFEPPS 322
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|      150       160       170       180       190       200       210       220       230       240       250       260       270       280|      290       300       310       320  
                                                                                                                                                                      141-MSE 149-MSE                                                                                                                             281-MSE            300-MSE                  


Chain C from PDB  Type:PROTEIN  Length:322
 aligned with O69946_STRCO | O69946 from UniProtKB/TrEMBL  Length:332

    Alignment length:322
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321  
         O69946_STRCO     2 PRNFTLFTGQWADLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLDPVGFLWDFRDRIYHVDCKEARKRLDGRNGRLGSHLPWGDPRRGWDFVSAGHGDVPWEDVFRMLRSIDYQGPVSVEWEDAGMDRLQGAPEALTRLKAFDFEPPS 323
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhh..hhhhhhhhhhhhh..eeeee......hhhhhhhh.hhhhhhhhhhhhh.....eeeehhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhh.....eeeee...hhhhhh.hhhhhhhhh...eeeeee.eeee.....................eeee.......hhhhhhhhhhhh.....eee.......hhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zds C   1 PRNFTLFTGQWADLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAmFPPAPESmIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLDPVGFLWDFRDRIYHVDCKEARKRLDGRNGRLGSHLPWGDPRRGWDFVSAGHGDVPWEDVFRmLRSIDYQGPVSVEWEDAGmDRLQGAPEALTRLKAFDFEPPS 322
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|      150       160       170       180       190       200       210       220       230       240       250       260       270       280|      290       300       310       320  
                                                                                                                                                                      141-MSE 149-MSE                                                                                                                             281-MSE            300-MSE                  


Chain D from PDB  Type:PROTEIN  Length:322
 aligned with O69946_STRCO | O69946 from UniProtKB/TrEMBL  Length:332

    Alignment length:322
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321  
         O69946_STRCO     2 PRNFTLFTGQWADLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLDPVGFLWDFRDRIYHVDCKEARKRLDGRNGRLGSHLPWGDPRRGWDFVSAGHGDVPWEDVFRMLRSIDYQGPVSVEWEDAGMDRLQGAPEALTRLKAFDFEPPS 323
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhh..hhhhhhhhhhhhh..eeeee......hhhhhhhh.hhhhhhhhhhhhh......eeehhhhh.......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhh.....eeeee.hhhhh....hhhhhhhhh...eeeeee..eee.....................eee........hhhhhhhhhhhh.....eee.......hhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zds D   1 PRNFTLFTGQWADLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAmFPPAPESmIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLDPVGFLWDFRDRIYHVDCKEARKRLDGRNGRLGSHLPWGDPRRGWDFVSAGHGDVPWEDVFRmLRSIDYQGPVSVEWEDAGmDRLQGAPEALTRLKAFDFEPPS 322
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|      150       160       170       180       190       200       210       220       230       240       250       260       270       280|      290       300       310       320  
                                                                                                                                                                      141-MSE 149-MSE                                                                                                                             281-MSE            300-MSE                  


Chain E from PDB  Type:PROTEIN  Length:321
 aligned with O69946_STRCO | O69946 from UniProtKB/TrEMBL  Length:332

    Alignment length:321
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321 
         O69946_STRCO     2 PRNFTLFTGQWADLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLDPVGFLWDFRDRIYHVDCKEARKRLDGRNGRLGSHLPWGDPRRGWDFVSAGHGDVPWEDVFRMLRSIDYQGPVSVEWEDAGMDRLQGAPEALTRLKAFDFEPP 322
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhh..hhhhhhhhhhhhh..eeeee......hhhhhhhh.hhhhhhhhhhhhh..eeeeeehhhhhhhhhh...hhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhh.....eeeee.hhhhhhhh.hhhhhhhhh...eeeeee.eeee.....................eeee.......hhhhhhhhhhhh.....eee.......hhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zds E   1 PRNFTLFTGQWADLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAmFPPAPESmIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLDPVGFLWDFRDRIYHVDCKEARKRLDGRNGRLGSHLPWGDPRRGWDFVSAGHGDVPWEDVFRmLRSIDYQGPVSVEWEDAGmDRLQGAPEALTRLKAFDFEPP 321
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|      150       160       170       180       190       200       210       220       230       240       250       260       270       280|      290       300       310       320 
                                                                                                                                                                      141-MSE 149-MSE                                                                                                                             281-MSE            300-MSE                 


Chain F from PDB  Type:PROTEIN  Length:322
 aligned with O69946_STRCO | O69946 from UniProtKB/TrEMBL  Length:332

    Alignment length:322
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321  
         O69946_STRCO     2 PRNFTLFTGQWADLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLDPVGFLWDFRDRIYHVDCKEARKRLDGRNGRLGSHLPWGDPRRGWDFVSAGHGDVPWEDVFRMLRSIDYQGPVSVEWEDAGMDRLQGAPEALTRLKAFDFEPPS 323
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------------------AP_endonuc_2-2zdsF01 F:20-273                                                                                                                                                                                                                                 AP_endonuc_2_N-2zdsF07 F:274-322                  Pfam domains (1)
           Pfam domains (2) -------------------AP_endonuc_2-2zdsF02 F:20-273                                                                                                                                                                                                                                 AP_endonuc_2_N-2zdsF08 F:274-322                  Pfam domains (2)
           Pfam domains (3) -------------------AP_endonuc_2-2zdsF03 F:20-273                                                                                                                                                                                                                                 AP_endonuc_2_N-2zdsF09 F:274-322                  Pfam domains (3)
           Pfam domains (4) -------------------AP_endonuc_2-2zdsF04 F:20-273                                                                                                                                                                                                                                 AP_endonuc_2_N-2zdsF10 F:274-322                  Pfam domains (4)
           Pfam domains (5) -------------------AP_endonuc_2-2zdsF05 F:20-273                                                                                                                                                                                                                                 AP_endonuc_2_N-2zdsF11 F:274-322                  Pfam domains (5)
           Pfam domains (6) -------------------AP_endonuc_2-2zdsF06 F:20-273                                                                                                                                                                                                                                 AP_endonuc_2_N-2zdsF12 F:274-322                  Pfam domains (6)
         Sec.struct. author ...eeee.hhhh..hhhhhhhhhhhhh..eeeee......hhhhhhhh.hhhhhhhhhhhhh..eeeeeeehhhhhh......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee........hhhhhhhhhhhh.....eeeeehhhhhhhhh.hhhhhhhhh...eeeeee.eeee.....................eeee.......hhhhhhhhhhhh.....eee.......hhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2zds F   1 PRNFTLFTGQWADLPLEEVCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDAIIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAmFPPAPESmIERGYQDFADRWNPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLDPVGFLWDFRDRIYHVDCKEARKRLDGRNGRLGSHLPWGDPRRGWDFVSAGHGDVPWEDVFRmLRSIDYQGPVSVEWEDAGmDRLQGAPEALTRLKAFDFEPPS 322
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140|      150       160       170       180       190       200       210       220       230       240       250       260       270       280|      290       300       310       320  
                                                                                                                                                                      141-MSE 149-MSE                                                                                                                             281-MSE            300-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2ZDS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2ZDS)

(-) Pfam Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Clan: TIM_barrel (694)
(-)
Clan: no clan defined [family: AP_endonuc_2_N] (2)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (O69946_STRCO | O69946)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

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