Chain A from PDB Type:PROTEIN Length:16
aligned with PBPA_STRPN | Q04707 from UniProtKB/Swiss-Prot Length:719
Alignment length:16
60
PBPA_STRPN 51 TSSKIYDNKNQLIADL 66
SCOP domains ---------------- SCOP domains
CATH domains ---------------- CATH domains
Pfam domains ---------------- Pfam domains
Sec.struct. author ...eee.....eeee. Sec.struct. author
SAPs(SNPs) ---------------- SAPs(SNPs)
PROSITE ---------------- PROSITE
Transcript ---------------- Transcript
2zc5 A 51 TSSKIYDNKNQLIADL 66
60
Chain A from PDB Type:PROTEIN Length:16
aligned with PBPA_STRR6 | Q8DR59 from UniProtKB/Swiss-Prot Length:719
Alignment length:16
60
PBPA_STRR6 51 TSSKIYDNKNQLIADL 66
SCOP domains ---------------- SCOP domains
CATH domains ---------------- CATH domains
Pfam domains ---------------- Pfam domains
Sec.struct. author ...eee.....eeee. Sec.struct. author
SAPs(SNPs) ---------------- SAPs(SNPs)
PROSITE ---------------- PROSITE
Transcript ---------------- Transcript
2zc5 A 51 TSSKIYDNKNQLIADL 66
60
Chain B from PDB Type:PROTEIN Length:384
aligned with PBPA_STRPN | Q04707 from UniProtKB/Swiss-Prot Length:719
Alignment length:384
276 286 296 306 316 326 336 346 356 366 376 386 396 406 416 426 436 446 456 466 476 486 496 506 516 526 536 546 556 566 576 586 596 606 616 626 636 646
PBPA_STRPN 267 NYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYDSTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYALQQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKVVFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLTYGTGRNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFAGYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 650
SCOP domains d2zc5b_ B: automated matches SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .....hhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhh............eeeeeeee.....eeeee......................hhhhhhhhhhhhhhhhh........eeee....................eeeehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhh............hhhhhhhhhhhhhhh.eee....eeeeee....eee....eee..hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhh......ee.eeeeeeee..eeeeeeee.......ee.hhhhhhhhhhhhhhhhhhh.............eee..eee.. Sec.struct. author
SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------I----------K-----------------------------------------------------------------------------------------------------------------------------I---------E------S-------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2zc5 B 267 NYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYDSTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYALQQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKVVFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLSYGTGQNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFAGYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 650
276 286 296 306 316 326 336 346 356 366 376 386 396 406 416 426 436 446 456 466 476 486 496 506 516 526 536 546 556 566 576 586 596 606 616 626 636 646
Chain B from PDB Type:PROTEIN Length:384
aligned with Q549Y6_STREE | Q549Y6 from UniProtKB/TrEMBL Length:719
Alignment length:384
276 286 296 306 316 326 336 346 356 366 376 386 396 406 416 426 436 446 456 466 476 486 496 506 516 526 536 546 556 566 576 586 596 606 616 626 636 646
Q549Y6_STREE 267 NYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYDSTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYALQQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKVVFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLSYGTGRNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFAGYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 650
SCOP domains d2zc5b_ B: automated matches SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .....hhhhhhhhhhhhhhhh........eeeee..hhhhhhhhhhhhh............eeeeeeee.....eeeee......................hhhhhhhhhhhhhhhhh........eeee....................eeeehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhh............hhhhhhhhhhhhhhh.eee....eeeeee....eee....eee..hhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhhhhh......ee.eeeeeeee..eeeeeeee.......ee.hhhhhhhhhhhhhhhhhhh.............eee..eee.. Sec.struct. author
SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------I----------K-----------------------------------------------------------------------------------------------------------------------------I---------E------S-------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2zc5 B 267 NYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYDSTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYALQQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKVVFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLSYGTGQNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFAGYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 650
276 286 296 306 316 326 336 346 356 366 376 386 396 406 416 426 436 446 456 466 476 486 496 506 516 526 536 546 556 566 576 586 596 606 616 626 636 646
Chain C from PDB Type:PROTEIN Length:16
aligned with PBPA_STRPN | Q04707 from UniProtKB/Swiss-Prot Length:719
Alignment length:16
60
PBPA_STRPN 51 TSSKIYDNKNQLIADL 66
SCOP domains ---------------- SCOP domains
CATH domains ---------------- CATH domains
Pfam domains (1) --------Transgly Pfam domains (1)
Pfam domains (2) --------Transgly Pfam domains (2)
Sec.struct. author ...eee.....eeee. Sec.struct. author
SAPs(SNPs) ---------------- SAPs(SNPs)
PROSITE ---------------- PROSITE
Transcript ---------------- Transcript
2zc5 C 51 TSSKIYDNKNQLIADL 66
60
Chain C from PDB Type:PROTEIN Length:16
aligned with PBPA_STRR6 | Q8DR59 from UniProtKB/Swiss-Prot Length:719
Alignment length:16
60
PBPA_STRR6 51 TSSKIYDNKNQLIADL 66
SCOP domains ---------------- SCOP domains
CATH domains ---------------- CATH domains
Pfam domains (1) --------Transgly Pfam domains (1)
Pfam domains (2) --------Transgly Pfam domains (2)
Sec.struct. author ...eee.....eeee. Sec.struct. author
SAPs(SNPs) ---------------- SAPs(SNPs)
PROSITE ---------------- PROSITE
Transcript ---------------- Transcript
2zc5 C 51 TSSKIYDNKNQLIADL 66
60
Chain D from PDB Type:PROTEIN Length:384
aligned with PBPA_STRPN | Q04707 from UniProtKB/Swiss-Prot Length:719
Alignment length:384
276 286 296 306 316 326 336 346 356 366 376 386 396 406 416 426 436 446 456 466 476 486 496 506 516 526 536 546 556 566 576 586 596 606 616 626 636 646
PBPA_STRPN 267 NYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYDSTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYALQQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKVVFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLTYGTGRNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFAGYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 650
SCOP domains d2zc5d_ D: automated matches SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains (1) --------------------------------------------------------------Transpeptidase-2zc5D01 D:329-623 --------------------------- Pfam domains (1)
Pfam domains (2) --------------------------------------------------------------Transpeptidase-2zc5D02 D:329-623 --------------------------- Pfam domains (2)
Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhh...........eeeeeeee.....eeeee......................hhhhhhhhhhhhhhhhh........eeee....................eeeehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh.............hhhhhhhhhhhhhh..ee.....eeeeee....eee.....ee..hhhhhhhhhhhhhhhh...............eeeeee...hhhhhhhh......ee..eeeeee...eeeeeeee.......ee.hhhhhhhhhhhhhhhhhhh............eeee..eeee. Sec.struct. author
SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------I----------K-----------------------------------------------------------------------------------------------------------------------------I---------E------S-------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2zc5 D 267 NYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYDSTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYALQQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKVVFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLSYGTGQNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFAGYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 650
276 286 296 306 316 326 336 346 356 366 376 386 396 406 416 426 436 446 456 466 476 486 496 506 516 526 536 546 556 566 576 586 596 606 616 626 636 646
Chain D from PDB Type:PROTEIN Length:384
aligned with Q549Y6_STREE | Q549Y6 from UniProtKB/TrEMBL Length:719
Alignment length:384
276 286 296 306 316 326 336 346 356 366 376 386 396 406 416 426 436 446 456 466 476 486 496 506 516 526 536 546 556 566 576 586 596 606 616 626 636 646
Q549Y6_STREE 267 NYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYDSTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYALQQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKVVFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLSYGTGRNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFAGYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 650
SCOP domains d2zc5d_ D: automated matches SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains (1) --------------------------------------------------------------Transpeptidase-2zc5D01 D:329-623 --------------------------- Pfam domains (1)
Pfam domains (2) --------------------------------------------------------------Transpeptidase-2zc5D02 D:329-623 --------------------------- Pfam domains (2)
Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh.......eeeee..hhhhhhhhhhhhhh...........eeeeeeee.....eeeee......................hhhhhhhhhhhhhhhhh........eeee....................eeeehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhh.............hhhhhhhhhhhhhh..ee.....eeeeee....eee.....ee..hhhhhhhhhhhhhhhh...............eeeeee...hhhhhhhh......ee..eeeeee...eeeeeeee.......ee.hhhhhhhhhhhhhhhhhhh............eeee..eeee. Sec.struct. author
SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------I----------K-----------------------------------------------------------------------------------------------------------------------------I---------E------S-------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
2zc5 D 267 NYPAYMDNYLKEVINQVEEETGYNLLTTGMDVYTNVDQEAQKHLWDIYNTDEYVAYPDDELQVASTIVDVSNGKVIAQLGARHQSSNVSFGINQAVETNRDWGSTMKPITDYAPALEYGVYDSTATIVHDEPYNYPGTNTPVYNWDRGYFGNITLQYALQQSRNVPAVETLNKVGLNRAKTFLNGLGIDYPSIHYSNAISSNTTESDKKYGASSEKMAAAYAAFANGGTYYKPMYIHKVVFSDGSEKEFSNVGTRAMKETTAYMMTDMMKTVLSYGTGQNAYLAWLPQAGKTGTSNYTDEEIENHIKTSQFVAPDELFAGYTRKYSMAVWTGYSNRLTPLVGNGLTVAAKVYRSMMTYLSEGSNPEDWNIPEGLYRNGEFVFKN 650
276 286 296 306 316 326 336 346 356 366 376 386 396 406 416 426 436 446 456 466 476 486 496 506 516 526 536 546 556 566 576 586 596 606 616 626 636 646
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |